BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3755.p
         (344 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093512|ref|YP_001098587.1| dihydroorotase [Herminiimonas a...   591   e-170

>gi|134093512|ref|YP_001098587.1| dihydroorotase [Herminiimonas
           arsenicoxydans]
          Length = 352

 Score =  591 bits (1524), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 273/340 (80%), Positives = 306/340 (90%)

Query: 5   LTITRPDDWHLHLRDGATMQDVLPHTARQFARAIVMPNLKPPVTTTEQAGAYRQRILAAL 64
           +TITRPDDWHLHLRDGAT+  VLP TARQFARAIVMPNLKPPVTTT QA AYR+RILAAL
Sbjct: 13  ITITRPDDWHLHLRDGATIASVLPDTARQFARAIVMPNLKPPVTTTAQAVAYRERILAAL 72

Query: 65  PAGMSFEPLMVLYLTDNTPPDEIRRAKDSGFVKAVKLYPAGATTNSDAGVTDLSKCYKTL 124
           PAGM FEPLM LYLT+NTPP+EI+RA+DSG V AVKLYPAGATTNSDAGV+DLSKCYKTL
Sbjct: 73  PAGMQFEPLMTLYLTNNTPPEEIQRARDSGVVHAVKLYPAGATTNSDAGVSDLSKCYKTL 132

Query: 125 EVLQEVGMPFLVHGEVTDPEIDLFDREAVFIDRIMKPLRQAMPELKVVFEHITTKEAADY 184
           E +Q++GMPFLVHGEVTDP +D+FDREAVFIDR+M+PLR+ MPELKVVFEHITTK+AA Y
Sbjct: 133 EAMQKIGMPFLVHGEVTDPNVDIFDREAVFIDRVMQPLRRDMPELKVVFEHITTKDAAQY 192

Query: 185 VLAGEGPTAATITAHHLLFNRNEMFKGGIRPHYYCLPVLKRETHRKALVAAATSGNDKFF 244
           V   +   AATITAHHLL+NRNE+FKGGIRPHYYCLPVLKRE HR+ALVAAATSG++KFF
Sbjct: 193 VAEADRHVAATITAHHLLYNRNEIFKGGIRPHYYCLPVLKRELHRQALVAAATSGSNKFF 252

Query: 245 LGTDSAPHAKGVKEHACGCAGCYTALHALELYAQAFDSAGALDKFEAFASFNGPDFYNLP 304
           LGTDSAPH KG+KEHACGCAGCYTALHA+ELY QAFD A ALDK E FASFNGPDFY+LP
Sbjct: 253 LGTDSAPHPKGLKEHACGCAGCYTALHAMELYTQAFDQADALDKLEQFASFNGPDFYSLP 312

Query: 305 RNTGTVSLKRETWSIPAELPMGEATVVPLSAGEQIHWKMV 344
           RNTGT++L+RE W +P ELP+GE T+VPL+ GE I WK V
Sbjct: 313 RNTGTITLRREEWQVPGELPLGETTLVPLNGGETIGWKFV 352


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 693,710
Number of extensions: 29052
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 262
Effective length of database: 730,157
Effective search space: 191301134
Effective search space used: 191301134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)