BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3750.p
         (345 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093525|ref|YP_001098600.1| N-acetyl-gamma-glutamyl-phospha...   623   e-180
gi|134093906|ref|YP_001098981.1| N-acetyl-gamma-glutamyl-phospha...    63   3e-11

>gi|134093525|ref|YP_001098600.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herminiimonas arsenicoxydans]
          Length = 345

 Score =  623 bits (1606), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 291/345 (84%), Positives = 323/345 (93%)

Query: 1   MIKVGIVGGTGYTGVELLRIFATHPQARVQAVTSRKEDGMPVAEMYPSLRGRVDVAFSSP 60
           MIKVGIVGGTGYTGVELLRI ATHP+  + A+TSRKEDG+PV++M+PSLRGRVD+AFSSP
Sbjct: 1   MIKVGIVGGTGYTGVELLRILATHPEVELTAITSRKEDGLPVSDMFPSLRGRVDLAFSSP 60

Query: 61  DKAQLNDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCT 120
           DKA+L +CDVVFFATPHGVAMAQAPEL+AAGVKVIDLAADFR+QD AAFEKWYK+PHSC 
Sbjct: 61  DKAKLTECDVVFFATPHGVAMAQAPELLAAGVKVIDLAADFRLQDTAAFEKWYKMPHSCP 120

Query: 121 ELLKEAAYGLPELNREAIRKARVVGNPGCYPTTMQLGFAPLLKAGVIDASHLIADCKSGV 180
           ELLKEAAYGL ELNR+AIRKAR+VGNPGCYPTTMQLG APLLKA VIDASHLIADCKSGV
Sbjct: 121 ELLKEAAYGLVELNRDAIRKARIVGNPGCYPTTMQLGLAPLLKADVIDASHLIADCKSGV 180

Query: 181 SGAGRKAELSLLFSEASDNFKAYGVSGHRHSPETIERLSHLTSDKVGLLFTPHLVPMIRG 240
           SGAGRKAE+S+LF+EA DNFKAYGVSGHRHSPET+ERL  LT  KVGLLF PHLVPMIRG
Sbjct: 181 SGAGRKAEVSMLFAEAGDNFKAYGVSGHRHSPETVERLQILTGQKVGLLFAPHLVPMIRG 240

Query: 241 MHSTLYARLTRDIDNAALQALFEEAYKDEPFVDVLPFGSHPETRTTRASNMLRLAVHRPD 300
           MHST+YARLT+++DNAALQALFE AY  EPFVDV+PFGSHPETR+TRASNMLR+A+HRP+
Sbjct: 241 MHSTMYARLTKEMDNAALQALFENAYASEPFVDVMPFGSHPETRSTRASNMLRIALHRPN 300

Query: 301 NGDTVVVLVVQDNLVKGASGQAVQCMNLMFGLEETSGLQQVPVLP 345
           +GDT+V+LVVQDNLVKGASGQAVQCMNLMFGL ET+GL  VPVLP
Sbjct: 301 DGDTIVILVVQDNLVKGASGQAVQCMNLMFGLPETTGLLHVPVLP 345


>gi|134093906|ref|YP_001098981.1| N-acetyl-gamma-glutamyl-phosphate
           reductase [Herminiimonas arsenicoxydans]
          Length = 310

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 63/295 (21%)

Query: 65  LNDCDVVFFATPHGVAMAQAPELVAAGVKVIDLAADFRMQDVAAFEKWYKLPHSCTELLK 124
           LN+ DV     P   A      +    V+V+D ++  R+        W            
Sbjct: 49  LNEVDVAILCLPDDAAKDAVSWIKNDSVRVLDASSAHRVA-----SGW------------ 91

Query: 125 EAAYGLPELNREA---IRKARVVGNPGCYPTTMQLGFAPLLKAGVIDA-SHLIADCKSGV 180
              YG PE++ E    I + R V NPGCY T +     PL++ G++   + +  +  SG 
Sbjct: 92  --VYGFPEMHPEQASRIAQGRRVSNPGCYATGVIALLNPLIQRGLLAPDTPITVNAISGY 149

Query: 181 SGAGRKAELSLLFSEASDN----FKAYGVS-GHRHSPETIERLSHLTSDKVGLLFTPHLV 235
           SG G+    S    E   N    F+ YG++  H+H  E +++ S L+      LF P + 
Sbjct: 150 SGGGKAMIASY---ETPSNMMPVFRPYGLNFQHKHLGE-MQQHSGLSRPP---LFIPAVG 202

Query: 236 PMIRGM----------------HSTLYARLTRDIDNAA---LQALFEEAYKDEPFVDVLP 276
              +GM                   L+ +L+   +N+A   +  L E    D   ++   
Sbjct: 203 TFRQGMLVQIPLPLWASRVATTPYDLHKKLSEHYENSATVCVAPLIEGTAADSANINPER 262

Query: 277 FGSHPETRTTRASNMLRLAVHRPDNGDTVVVLVVQDNLVKGASGQAVQCMNLMFG 331
           F +         +NML ++V      +  V++   DNL KGASG A+Q + LM G
Sbjct: 263 FNN---------TNMLEISVFGDTASEQAVLMACFDNLGKGASGAAIQNLRLMLG 308


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 627,672
Number of extensions: 25038
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 263
Effective length of database: 730,157
Effective search space: 192031291
Effective search space used: 192031291
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)