BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3749.p
         (237 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093526|ref|YP_001098601.1| putative signal peptide [Hermin...   250   4e-68

>gi|134093526|ref|YP_001098601.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 255

 Score =  250 bits (639), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 121/236 (51%), Positives = 176/236 (74%), Gaps = 5/236 (2%)

Query: 2   SISAPKMTIKRHLPLPLLILLWAAVVAVGAAAAVWTYQLGRNNLPGLHGDAGDASEQIEQ 61
           SISAP+MTIK HLP PL +++ A V+ + AA A+W Y LGR+   GL  + G ++ Q+ +
Sbjct: 25  SISAPRMTIKNHLPWPLRVIVIAVVLGLSAAIAMWAYDLGRS-FTGL--NKGASAPQLAE 81

Query: 62  LSEQVKKLTAENERLQSASNASQNELKIAQTAQATLAGQVKNLEAENNRQKEDLAFFDSL 121
           + EQ+K+++AE +R Q+  NA++++L I ++ QA L  Q+K LE+EN++ K+DL+FF+SL
Sbjct: 82  IQEQIKQISAERDRFQTTVNAAESQLNIERSLQAQLTWQIKTLESENSKLKDDLSFFESL 141

Query: 122 LPTNLGAPGITIQRFKAEQAAPNQLRYRVLVMQGGGGTQQFAGNLQLSVNIVQGGKGVTI 181
           LPTN G  GITI+RFKA+ A P QLRYR+L+MQGG     F G+ QL V +VQ GK   +
Sbjct: 142 LPTNTGVQGITIRRFKADIAEPGQLRYRLLLMQGGKLVSDFIGHYQLVVTLVQEGKSAIM 201

Query: 182 NFPESNAADQARYRLAFKYYQRVEGLLTIPEGATVKSVAVRVLDRGQVRAQQSLDL 237
             P+ +AAD  ++RL+F++YQR+EG+L +PEGATVKSV ++VL++G +RAQQS DL
Sbjct: 202 TLPKPDAAD--KFRLSFRHYQRIEGVLALPEGATVKSVQIKVLEKGTMRAQQSTDL 255


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 366,590
Number of extensions: 13751
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 158
Effective length of database: 740,042
Effective search space: 116926636
Effective search space used: 116926636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)