BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3748.p
         (131 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093527|ref|YP_001098602.1| hypothetical protein HEAR0244 [...   185   7e-49

>gi|134093527|ref|YP_001098602.1| hypothetical protein HEAR0244
           [Herminiimonas arsenicoxydans]
          Length = 134

 Score =  185 bits (469), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 92/126 (73%), Positives = 110/126 (87%), Gaps = 1/126 (0%)

Query: 1   MFTRKTKSTIDSLIGMSTNITGDVGFKGGLRIDGAITGNINAEAGQPSVLVISEHAKVVG 60
           MF+RKTKSTIDSLIG +TNI G+V FKGGLRIDG + G++ A+A + S+LVISEHAKV G
Sbjct: 1   MFSRKTKSTIDSLIGAATNIAGNVHFKGGLRIDGCVKGDVIADADETSMLVISEHAKVEG 60

Query: 61  EIRAAHLIVNGEIIGDVHSSELLELQPKARITGNVFYKALEMHGGALVSGKLSHDQQVET 120
           E+R AHL+VNG I+G V+SSELLELQPKARITG+V YKALEMHGGA+VSGKL+HD  +E 
Sbjct: 61  EVRVAHLLVNGVIVGPVYSSELLELQPKARITGDVHYKALEMHGGAVVSGKLTHD-TMEE 119

Query: 121 PLLKLA 126
           P+LKLA
Sbjct: 120 PILKLA 125


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.133    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 246,187
Number of extensions: 9359
Number of successful extensions: 22
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 1
Length of query: 131
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 59
Effective length of database: 763,107
Effective search space: 45023313
Effective search space used: 45023313
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 124 (52.4 bits)