BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3747.p
         (121 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093528|ref|YP_001098603.1| iron-sulfur cluster insertion p...   221   6e-60
gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster...    65   1e-12

>gi|134093528|ref|YP_001098603.1| iron-sulfur cluster insertion
           protein ErpA [Herminiimonas arsenicoxydans]
          Length = 116

 Score =  221 bits (564), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 108/120 (90%), Positives = 114/120 (95%), Gaps = 5/120 (4%)

Query: 1   MNAVAELQQTDMPAPINFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDE 60
           MNA+AE     MP+PI FSDSAAAKVA+LIE+EGNPDLKLRVFVQGGGCSGFQYGFTFDE
Sbjct: 1   MNAIAE-----MPSPILFSDSAAAKVAELIEDEGNPDLKLRVFVQGGGCSGFQYGFTFDE 55

Query: 61  IVNEDDTTMSKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFS 120
           IVNEDDTTM+KNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSF+
Sbjct: 56  IVNEDDTTMTKNGVQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFT 115


>gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster
           assembly and activation [Herminiimonas arsenicoxydans]
          Length = 107

 Score = 64.7 bits (156), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 16  INFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNGVQ 75
           I  ++ AA  + + +E  G   + LR  V+  GCSG  Y   + +    +D+    +GV+
Sbjct: 3   ITLTEKAAKHINRYMERRGK-GIGLRFGVRTTGCSGLAYKLEYVDESASEDSVFESHGVK 61

Query: 76  LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSV 121
           + +D  S  Y+ G E+D+  +     F   NPN    CGCG SF +
Sbjct: 62  VFVDPKSLPYIDGTELDFAREGLNEGFKFHNPNVKDECGCGESFRI 107


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 222,843
Number of extensions: 8256
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 121
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 50
Effective length of database: 766,402
Effective search space: 38320100
Effective search space used: 38320100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 123 (52.0 bits)