BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3746.p (427 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095913|ref|YP_001100988.1| glutamate-1-semialdehyde aminot... 685 0.0 gi|134094354|ref|YP_001099429.1| putative bifunctional glutamate... 127 7e-31 gi|134094000|ref|YP_001099075.1| acetylornithine transaminase pr... 121 5e-29 gi|134093412|ref|YP_001098487.1| ornithine aminotransferase [Her... 102 4e-23 gi|134095606|ref|YP_001100681.1| beta alanine--pyruvate transami... 93 3e-20 >gi|134095913|ref|YP_001100988.1| glutamate-1-semialdehyde aminotransferase [Herminiimonas arsenicoxydans] Length = 428 Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/426 (78%), Positives = 372/426 (87%) Query: 1 MTKTNASLFARAQQSTPGGVNSPVRAFRSVGGTPRFIERAEGPWFWDAEGKRYIDYIGSW 60 M+ N LFARAQ+STPGGVNSPVRAFRSVGGTPRFI RAEGP+FWDA+ +RYIDYIGSW Sbjct: 1 MSSNNEILFARAQKSTPGGVNSPVRAFRSVGGTPRFITRAEGPYFWDADDRRYIDYIGSW 60 Query: 61 GPAIVGHAHPEVVKAVQQAAARGLSFGAPTEAEIEMAEEIIKLVPSIEQIRLVSSGTEAT 120 GPAIVGHAHP+VVKAVQ AA RGLSFGAPTE EI MAE I +LVPSIEQ+RLVSSGTEA Sbjct: 61 GPAIVGHAHPDVVKAVQDAATRGLSFGAPTEGEIRMAELICQLVPSIEQVRLVSSGTEAA 120 Query: 121 MSALRLARGATGRDKIIKFEGCYHGHADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVL 180 MSALRLARGATGRD IIKFEGCYHGHADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVL Sbjct: 121 MSALRLARGATGRDTIIKFEGCYHGHADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVL 180 Query: 181 DYNNAQQLEDAFKTAGHEIACVIVEPVAGNMNLVRASDEFLRTMRRLCTEYGAILIFDEV 240 DYNN QQLED FK G++IACVIVEPVAGNMNL+ A+ EFL+TMRR+CT+YGA+LIFDEV Sbjct: 181 DYNNPQQLEDTFKEIGNQIACVIVEPVAGNMNLLPATPEFLQTMRRVCTQYGAVLIFDEV 240 Query: 241 MSGFRVARGGAQELNGIVPDLTALGKVIGGGLPVAAFGGRAEVMKHLAPLGGVYQAGTLS 300 MSGFRVA GGAQ + I PDLT LGKVIGGGLPVAAFGGR ++M+HLAPLGGVYQAGTLS Sbjct: 241 MSGFRVALGGAQSMYDIKPDLTVLGKVIGGGLPVAAFGGRTDLMQHLAPLGGVYQAGTLS 300 Query: 301 GNPVTVAAGMATLKIIQQPEFYANLTAQTRKLADGLTAAAKAAGVTFTADAIGGMFGLYF 360 GNPVTVAAG+ATLK+IQ P FY +L QT KL GL+AAA+AA + F+A+++GGMFG+YF Sbjct: 301 GNPVTVAAGLATLKLIQVPGFYESLATQTGKLVAGLSAAARAANIAFSANSVGGMFGMYF 360 Query: 361 DAKVPTSYAEVMQGDKERFNRFFHKMLDASVYFAPSAFEAGFVSAQHSDAIIEETIAAAA 420 A+ P SY E+M+ D FN FFH MLDA VY APSAFEAGFVSAQH DAIIE +I AA Sbjct: 361 AAEKPQSYTEMMKCDVAHFNTFFHAMLDAGVYLAPSAFEAGFVSAQHDDAIIEASIQAAR 420 Query: 421 KAFTEL 426 +AF +L Sbjct: 421 QAFAQL 426 >gi|134094354|ref|YP_001099429.1| putative bifunctional glutamate-1-semialdehyde 2,1-aminomutase/3-deoxy-manno-octulosonate cytidylyltransferase [Herminiimonas arsenicoxydans] Length = 675 Score = 127 bits (320), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 124/436 (28%), Positives = 193/436 (44%), Gaps = 49/436 (11%) Query: 4 TNASLFARAQQSTPGG---VNSPVRAFRSVGGTPRFIERAEGPWFWDAEGKRYIDY-IGS 59 T L+ RA+Q PGG ++ F P + +A+G WD +G YID I Sbjct: 244 TGQKLWKRAKQIIPGGSMLLSKRAEMFLP-DLWPAYFSKAKGCKVWDLDGNEYIDMSIMG 302 Query: 60 WGPAIVGHAHPEVVKAVQQAAARGLSFGAPTEAEIEMAEEIIKLVPSIEQIRLVSSGTEA 119 G +G+ HPEV AV++ G E+ +AE++I+L P + R SG EA Sbjct: 303 IGTNTLGYGHPEVDDAVRRTIDAGNMSTLNCPEEVYLAEKLIELHPWADMARFARSGGEA 362 Query: 120 TMSALRLARGATGRDKIIKFEGC-YHGHADSLL--------VKAGSGLLTFGNPTSAGVP 170 A+R+AR A+G+DK+ C YHG D L V AG LL P GVP Sbjct: 363 NAIAIRIARAASGKDKVAI---CGYHGWHDWYLSANLGDDKVLAGH-LLPGLQPN--GVP 416 Query: 171 EDFAKHTLVLDYNNAQQLEDAFKTAGHEIACVIVEPVAGNMNLVR---ASDEFLRTMRRL 227 E +YNN +LE H+I + M +VR D FL +R+L Sbjct: 417 EGLRGTVFPFNYNNYAELEALVNE--HDIGVI-------KMEVVRNFGPEDNFLHKVRQL 467 Query: 228 CTEYGAILIFDEVMSGFRVARGGAQELNGIVPDLTALGKVIGGGLPVAAFGGRAEVMKHL 287 TE G +LIFDE SGFR GG ++ G+ PD+ K +G G + A GR E+M+ Sbjct: 468 ATERGIVLIFDECTSGFRQTYGGIHKMYGVEPDMAMFAKALGNGYAITATIGRREIMEAA 527 Query: 288 APLGGVYQAGTLSGNPVTVAAGMATLKIIQQPEFYANLTAQTRKLADGLTAAAKAAGVTF 347 + + T + A +ATL ++ + + + +T + A A ++ Sbjct: 528 Q---TTFISSTFWTERIGPTAALATLDVMARIKSWETITNTGLDITARWKALAAKYDLSI 584 Query: 348 TADAIGGMFGLYFDAKVPTSYAEVMQGDKERFNRFFHKMLDASVYFAPSAFEAGFVSAQH 407 T + + + G F++ +Y ++ +ML A Y A ++ +V +H Sbjct: 585 TTNGLPALTGFGFNSPNALAYKTLVT----------QEML-AKGYLAGTSV---YVCTEH 630 Query: 408 SDAIIEETIAAAAKAF 423 + ++ + A F Sbjct: 631 TPKVVNDFFEALEPVF 646 >gi|134094000|ref|YP_001099075.1| acetylornithine transaminase protein [Herminiimonas arsenicoxydans] Length = 400 Score = 121 bits (304), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 158/329 (48%), Gaps = 32/329 (9%) Query: 23 PVRAFRSVGGTPRFI-ERAEGPWFWDAEGKRYIDYIGSWGPAIVGHAHPEVVKAVQQAAA 81 PV A + P + +G W D GKRY+DY+ W +GH+ P+ ++ A + Sbjct: 7 PVNALLYITNRPELVFTEGDGMWLTDHNGKRYLDYLQGWAVNCLGHS-PKCIQDALAAQS 65 Query: 82 RGLSFGAP---TEAEIEMAEEIIKLVPSIEQIRLVSSGTEATMSALRLAR---------G 129 + L +P E I +A ++ +++ +SG EA SA++LAR Sbjct: 66 KKLINPSPAFYNEPSIALAA-LLTENSCFDRVFFANSGAEANESAIKLARKWGKLNQSAA 124 Query: 130 ATGRDKIIKFEGCYHGHADSLLVKAG-SGLLTFGNPTSAGVPEDFAKHTLVLDYNNAQQL 188 R +II F+ +HG + + +G +G T P G F K TL N+ + Sbjct: 125 GENRYEIITFDHSFHGRTLATMSASGKAGWDTIYAPQVPG----FFKATL----NDIASV 176 Query: 189 EDAFKTAGHEIACVIVEPVAGNMNLVRASDEFLRTMRRLCTEYGAILIFDEVMSGF-RVA 247 E G +A V++EPV G ++ A+ F++ +R L ++ +LI DEV +G R Sbjct: 177 EKLI--TGKTVA-VMLEPVQGEAGVLPATRAFMQALRALTKKHNILLITDEVQTGMGRCG 233 Query: 248 RGGAQELNGIVPDLTALGKVIGGGLPVAAFGGRAEVMKHLAPLGGVYQAGTLSGNPVTVA 307 A +L+GI PD+ LGK IGGG+P+AA R E+ A Q GT +GNP+ A Sbjct: 234 ELFAYQLSGIEPDIMTLGKGIGGGVPLAAMLCREEI----ACFEPGDQGGTYNGNPLMAA 289 Query: 308 AGMATLKIIQQPEFYANLTAQTRKLADGL 336 G+A + + P F ++ + L+ L Sbjct: 290 VGLAVAQALLAPGFMQSVKDKGEYLSKAL 318 >gi|134093412|ref|YP_001098487.1| ornithine aminotransferase [Herminiimonas arsenicoxydans] Length = 408 Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 153/344 (44%), Gaps = 30/344 (8%) Query: 34 PRFIERAEGPWFWDAEGKRYIDYIGSWGPAIVGHAHPEVVKAVQQAAAR-GLSFGAPTEA 92 P + + +G W WD GKRY+D + ++ GH+HP++V A+ A R ++ A Sbjct: 21 PVVLSKGKGIWLWDENGKRYMDMMSAYSAVSFGHSHPDLVAALTHQAGRLAVTSRAFYTD 80 Query: 93 EIEMAEEIIKLVPSIEQIRLVSSGTEATMSALRLARGATGRDKIIKFEGCYHGHADSLLV 152 ++ +++ + + Q ++SGTEA +AL+ AR K +G A+ ++ Sbjct: 81 QLGPFLQLLCEMTGMPQALPMNSGTEAVETALKAARKWG-----YKVKGIPDQQAEIIVC 135 Query: 153 K---AGSGLLTFGNPTSAGVPEDFAKHT---LVLDYNNAQQLEDAFKTAGHEIACVIVEP 206 AG G + A + F + + + +A LE A +VEP Sbjct: 136 HGNFAGRTTTIVGFSSEAQYRDGFGPFDGGFVTIPFGDAAALEAAITP---RTTAFLVEP 192 Query: 207 VAGNMNLVRASDEFLRTMRRLCTEYGAILIFDEVMSGF-RVARGGAQELNGIVPD-LTAL 264 + G ++ D +L R +CT + +LI DEV +G R R A + GI PD L Sbjct: 193 IQGEGGIIVPPDGYLAQCREICTRHNVLLICDEVQTGLGRTGRLLACDHEGIKPDGLILG 252 Query: 265 GKVIGGGLPVAAFGGRAEVMKHLAPLGGVYQAG----TLSGNPVTVAAGMATLKIIQQPE 320 + GG LPV+AF R +VM GV+ G T GNP+ A G A L ++ E Sbjct: 253 KALGGGLLPVSAFLARRDVM-------GVFTPGDHGSTFGGNPLAAAVGHAALSLLHDGE 305 Query: 321 FYANLTAQTRKLADGLTAAAKAAGVTFTADAIGGMFGLYFDAKV 364 A + + L DGL A A + G + GL D + Sbjct: 306 LIAAARQRGQHLLDGLHAIRHPA--IRSVRGKGLLIGLELDPAI 347 >gi|134095606|ref|YP_001100681.1| beta alanine--pyruvate transaminase [Herminiimonas arsenicoxydans] Length = 440 Score = 92.8 bits (229), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 159/364 (43%), Gaps = 45/364 (12%) Query: 23 PVRAFRSVGGTPRFIERAEGPWFWDAEGKRYIDYIGSWGPAIVGHAHPEVVKAVQQAAAR 82 P A R PR + A G ++ +G+R +D GH HP++V+AVQQ AA+ Sbjct: 13 PFTANRQFKAKPRLLASASGMYYTTDDGRRILDGTAGLWCVNAGHGHPKIVEAVQQQAAQ 72 Query: 83 G-----LSFGAPTEAEIEMAEEIIKLVPS-IEQIRLVSSGTEATMSALRLA------RGA 130 G P E A + + P + ++ + G+E +AL++A RG Sbjct: 73 MDFAPLFQIGHPKA--FEAATALTGIAPDGMNRVFFCNDGSEGVDTALKIALAYHRMRGD 130 Query: 131 TGRDKIIKFEGCYHG--HADSLLVKAGSGLLTFGNPTSAGVPEDFAKHTLVLDYN----- 183 GR ++I E YHG + + FG+ +A D +H L ++ N Sbjct: 131 AGRTRLIGRERAYHGVGFGGTAVGGIAGNRKQFGSGLTA---VDHLRHPLNIEKNAYSRG 187 Query: 184 -------NAQQLEDAFKTAGHE---IACVIVEPVAGNMNLVRASDEFLRTMRRLCTEYGA 233 A +LE A H+ +A VIVEP+ G+ ++ +L +R +C YG Sbjct: 188 LPLHGAEMADELEQRL-LALHDPSTVAAVIVEPLQGSTGVILPPKGYLEKIRAICDRYGI 246 Query: 234 ILIFDEVMSGF-RVARGGAQELNGIVPDLTALGK-VIGGGLPVAAFGGRA---EVMKHLA 288 +LIFDEV++GF R+ A + + PD+ K + +P+ A R +V A Sbjct: 247 LLIFDEVITGFGRLGSPFAADFFKVKPDMIVCAKGLTNAAVPMGAVIVRQQIHDVFMDAA 306 Query: 289 PLGGV--YQAGTLSGNPVTVAAGMATLKIIQQPEFYANLTAQTRKLADGLTAAAKAAGVT 346 P + + T SG+P+ AA +ATL + ++ + + D AA G+ Sbjct: 307 PADTIEFFHGYTYSGHPLAAAAAIATLAVHKEEQLFQRAADMAPYFED---AAHSLKGLP 363 Query: 347 FTAD 350 F D Sbjct: 364 FVKD 367 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 753,197 Number of extensions: 30817 Number of successful extensions: 114 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 7 Length of query: 427 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 343 Effective length of database: 723,567 Effective search space: 248183481 Effective search space used: 248183481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)