BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3745.p
         (279 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095912|ref|YP_001100987.1| hydroxymethylpyrimidine kinase ...   373   e-105
gi|134095443|ref|YP_001100518.1| phosphomethylpyrimidine kinase ...   139   1e-34

>gi|134095912|ref|YP_001100987.1| hydroxymethylpyrimidine kinase
           [Herminiimonas arsenicoxydans]
          Length = 281

 Score =  373 bits (957), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/272 (68%), Positives = 232/272 (85%), Gaps = 1/272 (0%)

Query: 1   VQNQTPPLILTFGAADPVGATGVQADLATFAAMGCHGLSVVTALLIGDTARVEDVQVVEV 60
           +QNQT PLILTFG  DPVGA G+QADLA+FAAMGCHGLSVVTAL IGDTAR+ED+Q+++ 
Sbjct: 1   MQNQTSPLILTFGPTDPVGAVGIQADLASFAAMGCHGLSVVTALFIGDTARIEDMQIIDA 60

Query: 61  DWVADQARVILEDMAVSAFKVGALGSIENISVIAEIVSDYPDVPLILDPFISALANQEDE 120
           DWV+DQARV+LEDM V+AFKVGA+GS+EN+S IAEIVSDYPD+PLI DPF+S+L +Q  E
Sbjct: 61  DWVSDQARVVLEDMPVAAFKVGAVGSVENVSAIAEIVSDYPDIPLIFDPFLSSLPDQGAE 120

Query: 121 -DDRLIAIRELLIPQATVLVCSAGELTRLAETWREPALGDTLMLDAMRIIELGCEYLLVT 179
            +D L+AIRELL+PQ TVLV S  EL R+AETWREP+  D + +DAMR+IE+GCEY+ VT
Sbjct: 121 GEDMLMAIRELLVPQTTVLVLSNVELARMAETWREPSEEDMMAVDAMRLIEMGCEYVFVT 180

Query: 180 NTQTDLQEVANSLFDESGLVRQDAWPRLPGSFVGAGTTLSAAMAAMLANDLEAPLAASEA 239
            T ++L +VAN+LFDE G++R D W R+ GS+ GAG TL+A +AA+LAN L+ P A  EA
Sbjct: 181 GTPSELTDVANTLFDEGGVIRHDNWQRISGSYSGAGATLAATIAALLANGLDIPEAVFEA 240

Query: 240 QEFTLAALANAQRIGMGKLLPDRYFWARESED 271
           QEFT+A++ANAQR+GMGKL+PDRYFWARES++
Sbjct: 241 QEFTVASIANAQRLGMGKLVPDRYFWARESDE 272


>gi|134095443|ref|YP_001100518.1| phosphomethylpyrimidine kinase
           [Herminiimonas arsenicoxydans]
          Length = 263

 Score =  139 bits (351), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 136/261 (52%), Gaps = 7/261 (2%)

Query: 3   NQTPPLILTFGAADPVGATGVQADLATFAAMGCHGLSVVTALLIGDTARVEDVQVVEVDW 62
           N   P++L     DP G  G+QAD+    A GCH    VTAL + ++  V D +V++ +W
Sbjct: 2   NTARPIVLCLSGHDPSGGAGLQADIEAIMAQGCHAAPTVTALTVQNSVDVLDFRVLDPEW 61

Query: 63  VADQARVILEDMAVSAFKVGALGSIENISVIAEIVSDYPDVPLILDPFISALANQEDEDD 122
           V  QAR +  D+ ++A K+G LGS+E +  +AEI+   P++P++ DP + A        D
Sbjct: 62  VFAQARAVTSDLTIAAVKLGMLGSLEMVDTVAEILRGLPNIPIVCDPVLRAGGGGALGKD 121

Query: 123 RL-IAIRELLIPQATVLVCSAGELTRLAETWREPALGDTLMLDAMRIIELGCEYLLVTNT 181
            +  A+RE L+P A+    +  E   LAE     A  D     A +++   C+ LL+T  
Sbjct: 122 EVGYAMRERLLPLASFATPNLPEARILAELPEGTA--DQC---AEKLLPY-CQNLLITGG 175

Query: 182 QTDLQEVANSLFDESGLVRQDAWPRLPGSFVGAGTTLSAAMAAMLANDLEAPLAASEAQE 241
             D QEV N L+   G  +     RLPGS+ G+G TL++A+A  LA   +A  A   A  
Sbjct: 176 HGDEQEVHNRLYSRDGSSKTFTCDRLPGSYHGSGCTLASALAGRLALGEDAATAVEAALA 235

Query: 242 FTLAALANAQRIGMGKLLPDR 262
           +T   L +A   G G+  P R
Sbjct: 236 YTWRTLRDADHPGKGQHFPRR 256


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 459,636
Number of extensions: 15732
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 279
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 198
Effective length of database: 733,452
Effective search space: 145223496
Effective search space used: 145223496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)