BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3744.p
         (62 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095911|ref|YP_001100986.1| rubredoxin like protein [Hermin...   105   4e-25
gi|134093894|ref|YP_001098969.1| rubredoxin [Herminiimonas arsen...    79   4e-17

>gi|134095911|ref|YP_001100986.1| rubredoxin like protein
          [Herminiimonas arsenicoxydans]
          Length = 64

 Score =  105 bits (262), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)

Query: 1  VTNSSQTEFKTWMCLICGWIYDEEAGLPDEGIAPGTRWDDVPINWTCPECGARKEDFEMV 60
          +  +S   F+TWMCLICGWIY+E  GLP+EGIA GTRW DVP+NWTCPECGARKEDFEMV
Sbjct: 3  INENSNEPFQTWMCLICGWIYNEATGLPEEGIAAGTRWADVPMNWTCPECGARKEDFEMV 62

Query: 61 AI 62
          AI
Sbjct: 63 AI 64


>gi|134093894|ref|YP_001098969.1| rubredoxin [Herminiimonas
          arsenicoxydans]
          Length = 54

 Score = 79.0 bits (193), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 42/54 (77%)

Query: 9  FKTWMCLICGWIYDEEAGLPDEGIAPGTRWDDVPINWTCPECGARKEDFEMVAI 62
             + C++CG+IYDE AG+P++GIAPGT+W D+P +W CPECG  K DFEMV I
Sbjct: 1  MNKYQCIVCGFIYDEAAGMPEDGIAPGTKWADIPADWECPECGVAKVDFEMVQI 54


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 134,162
Number of extensions: 4174
Number of successful extensions: 10
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 2
Length of query: 62
Length of database: 1,000,347
Length adjustment: 34
Effective length of query: 28
Effective length of database: 888,317
Effective search space: 24872876
Effective search space used: 24872876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 121 (51.2 bits)