BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3742.p (725 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095907|ref|YP_001100982.1| twitching motility transmembran... 783 0.0 gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 108 1e-24 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 105 7e-24 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 100 4e-22 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 98 1e-21 >gi|134095907|ref|YP_001100982.1| twitching motility transmembrane protein [Herminiimonas arsenicoxydans] Length = 757 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/702 (58%), Positives = 515/702 (73%) Query: 22 VTAPSRSLRLPYLCRFSLRTQTRLLLGVLAVSLTALCLFMWLGARLYLLATLQTNLASDL 81 V S +RLP + + L+ Q R+LL L SL F+WL A L + QT +A D Sbjct: 55 VLQKSGDIRLPLIGKLPLQQQVRILLIALGSSLVLGAAFVWLNAEYSALTSTQTQIAGDA 114 Query: 82 VMHSQRIGKAVPNAIQGNPQAFVQLAQSRNEFNRGLLLLSSGGLYQGQNIGPPDAAIKPV 141 +MHSQR+GKA PNAIQGN +AF QLA SR EFN L +LS GG+YQG++I PDA ++ Sbjct: 115 LMHSQRVGKATPNAIQGNKEAFKQLADSRKEFNNDLAILSKGGVYQGRDISAPDAKMEVA 174 Query: 142 LENVEHIWRRTDLAGETILGMEKELTGFGTTLKRLNQLLPVMLDLSEQIAMLQSQGHPTT 201 L+ V+ +W +D A TIL +E LTGFG TL+ LN + P +L+L+EQI+ L+SQ T Sbjct: 175 LQEVQKLWAGSDKAAATILKLEGPLTGFGKTLEVLNGISPNLLELTEQISTLKSQSGATP 234 Query: 202 REMAAASQLVMLTLRLGRSSNEFLTSEGVNPETAFMLGKDITAFGDLLKSLQEGNDMLRL 261 RE+AAA QLVMLT RL RS+NEFL+SEGVNPETAF+LGKD F D+ G+++LRL Sbjct: 235 REIAAAGQLVMLTQRLARSANEFLSSEGVNPETAFLLGKDTNTFRDITDGFLNGSEVLRL 294 Query: 262 RPASDPDLRDKLQELSRVFGEYQPQIAGILGNLQNFIAAKRAEQLVFVENETLKRHLTEL 321 ++PD R+KL EL F +YQ IA ILGNLQNFIAAK+A++L+F ENE LK+ LT+L Sbjct: 295 TKTTEPDTREKLVELQAAFADYQKSIAQILGNLQNFIAAKQAQELIFKENEALKQRLTDL 354 Query: 322 QDAYRVALKARSWTFWAVLAAMAMALLSAIGIALAQLQSSRNNAAAAEARRQEAEQQRQL 381 Q +YR + +W FW +LA++ ALLSA GIAL LQ SRN A+ARR+EAE QR Sbjct: 355 QQSYRTQQDSFTWPFWLMLASVFAALLSAAGIALVLLQDSRNRTNEADARREEAEGQRLE 414 Query: 382 AQQEEEKAMRANHQTQAAILRLMTELQKVADGDLTVHTTVSDDVTGAIADSVNYTVEALR 441 A+++EE+A +AN Q QAAILRLM ELQ+VADGDLTV TV++D+TGAIADSVNYTVE LR Sbjct: 415 ARKQEEEAKQANDQNQAAILRLMNELQEVADGDLTVQATVTEDITGAIADSVNYTVEELR 474 Query: 442 GLVEQVTQMAAKVALSSQQVRGTTTELGAAARAQAHRIQRIAQAMLEMSTQINGISVSAD 501 GLV +VT A V +S + +TEL A+ Q+ IQ QA+LEM+ QI +S SA Sbjct: 475 GLVGRVTNTAELVTSASNTAQNISTELLEASHKQSRDIQETGQAVLEMAVQITDVSKSAS 534 Query: 502 ESADVARHAVVVAERGTRAVEDAVKAMDGIGEQIRETSGRITRLGASSQMIGEITELISD 561 ESA+VAR +V AE+G+RAVE+A+K M+ I EQI+ETS RI RLG SSQ IGEITELISD Sbjct: 535 ESAEVARQSVTAAEQGSRAVENAIKGMNEIREQIQETSKRIKRLGESSQEIGEITELISD 594 Query: 562 ITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRD 621 ITE+TNVLALNAAIQAASAGEAGRGFSVVAEEVQ LAERS AT++IGALVR IQ DT D Sbjct: 595 ITEQTNVLALNAAIQAASAGEAGRGFSVVAEEVQRLAERSGEATKQIGALVRTIQTDTHD 654 Query: 622 VVVAMEKSTTGVTDGAVLSDAAGSALADIRSVSKQLAELIQGMAAATREQAVSASGVAQQ 681 V AMEKST GV +GA LSDAAG+AL+DIR VS +LAELIQG+++AT +QA SA+GVAQ Sbjct: 655 AVAAMEKSTQGVVEGAKLSDAAGAALSDIRRVSNRLAELIQGISSATEQQATSANGVAQN 714 Query: 682 IQGILSENDIIEQSREQVSTLYEELWDAARQLESSVSRFRVT 723 IQGIL+ + ++ +Q + EL A +L++SVSRFRVT Sbjct: 715 IQGILTVTEQTQEGTQQTAHSIRELSKLAEELKNSVSRFRVT 756 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/320 (30%), Positives = 168/320 (52%), Gaps = 37/320 (11%) Query: 408 QKVADGDLT--VHTTVSDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTT 465 +++A GDLT + T +D++ G + +VN + L +V + +A ++++ Sbjct: 214 RQLATGDLTSRLETKRTDEI-GLLLRAVNSIGQGLANVVWNIRHGTETLATETREIAAGN 272 Query: 466 TELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAV 525 +L + QA ++ A AM EM++ + + +A+++ +A A VA +G V + V Sbjct: 273 LDLSSRTEQQASSLEETASAMEEMTSTVKENAANAEQANALAHTAAEVAIKGGNVVAEVV 332 Query: 526 KAMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGR 585 MD I + SS+ I +I +I I +TN+LALNAA++AA AGE GR Sbjct: 333 HTMDSINQ--------------SSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGR 378 Query: 586 GFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGS 645 GF+VVA EV++LA+RSSAA REI L+ E S + V G+ L AG+ Sbjct: 379 GFAVVASEVRNLAQRSSAAAREIKTLI--------------EDSVSKVQSGSKLVAHAGA 424 Query: 646 ALADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQSR---EQVSTL 702 + ++ S +++ ++ +++A+REQ++ G+ Q Q I + + +Q+ EQ + Sbjct: 425 TMDEVVSSIQRVDNIMGEISSASREQSI---GIEQVNQAIAQMDQVTQQNAALVEQAAAS 481 Query: 703 YEELWDAARQLESSVSRFRV 722 E L + +L + VS F + Sbjct: 482 AESLQNQTTELNNVVSVFTI 501 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 89/287 (31%), Positives = 148/287 (51%), Gaps = 32/287 (11%) Query: 410 VADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQVRGTTTEL 468 VA GDLT TV S D TG + ++ ++L + QV +A +S Q+ +L Sbjct: 226 VASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDL 285 Query: 469 GAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAVEDAVKAM 528 + QA ++ A +M E+++ + + +A ++ +A A VAE+G V V M Sbjct: 286 SSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTM 345 Query: 529 DGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAGEAGRGFS 588 DGI S++ I +I +I I +TN+LALNAA++AA AGE GRGF+ Sbjct: 346 DGIN--------------TSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 391 Query: 589 VVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSDAAGSALA 648 VVA EV+ LA+RS+AA +EI L+ + S V G+ L AG+ + Sbjct: 392 VVASEVRSLAQRSAAAAKEIKTLI--------------DDSVDKVDTGSKLVAEAGTTMV 437 Query: 649 DIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS 695 ++ K++ +++ + AA++EQ ++G+ Q Q I + + +Q+ Sbjct: 438 EVVDSVKRVTDIMAEIMAASQEQ---SAGIEQVNQAIGQMDQVTQQN 481 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 99.8 bits (247), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 95/297 (31%), Positives = 158/297 (53%), Gaps = 52/297 (17%) Query: 410 VADGDLT--VHTTVSDDVTGAI-------ADSVNYTVEALRGLVEQVTQMAAKVALSSQQ 460 VA GDLT +H +++ TG + DS++ TV A+R E +T ++S + Sbjct: 227 VAAGDLTQQIHVNSTNE-TGQLLQALKDMNDSLSKTVSAVRRGTETIT-------VASGE 278 Query: 461 VRGTTTELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHA--VVVAERGT 518 + +L + AQA ++ A +M E+++ + ++AD AR A +VV+ Sbjct: 279 IASGNADLSSRTEAQAGSLEETASSMEELTSTVR-------QNADNARQANQLVVS---- 327 Query: 519 RAVEDAVKAMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAA 578 A E AVK G + E + + SS+ I +I +I I +TN+LALNAA++AA Sbjct: 328 -ATEVAVKG----GSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALNAAVEAA 382 Query: 579 SAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAV 638 AGE GRGF+VVA EV++LA+RS+ A +EI AL+ + S V G+ Sbjct: 383 RAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALI--------------DDSVHKVDAGSK 428 Query: 639 LSDAAGSALADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS 695 L D AGS + +I + K +A+++ + +A++EQ + G+ Q Q I +++ +Q+ Sbjct: 429 LVDQAGSTMQEIVTSVKHVADIMSEITSASQEQ---SDGIEQVNQAISQMDEMTQQN 482 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 90/324 (27%), Positives = 161/324 (49%), Gaps = 35/324 (10%) Query: 403 LMTELQKVADGDLTVHTTV-SDDVTGAIADSVNYTVEALRGLVEQVTQMAAKVALSSQQV 461 ++ +A GDLT + V S + G + + + L V QV + + ++ ++ ++ Sbjct: 222 MLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEI 281 Query: 462 RGTTTELGAAARAQAHRIQRIAQAMLEMSTQINGISVSADESADVARHAVVVAERGTRAV 521 +L + QA ++ A +M E+++ + + +A ++ +A A VA +G V Sbjct: 282 AAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVV 341 Query: 522 EDAVKAMDGIGEQIRETSGRITRLGASSQMIGEITELISDITERTNVLALNAAIQAASAG 581 D V MD I S++ I +I +I I +TN+LALNAA++AA AG Sbjct: 342 SDVVNTMDAIN--------------TSARKIVDIIGVIDGIAFQTNILALNAAVEAARAG 387 Query: 582 EAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMEKSTTGVTDGAVLSD 641 E GRGF+VVA EV+ LA+RS+AA +EI L+ + S V G L Sbjct: 388 EQGRGFAVVASEVRSLAQRSAAAAKEIKHLI--------------DDSVNKVDAGTRLVA 433 Query: 642 AAGSALADIRSVSKQLAELIQGMAAATREQAVSASGVAQQIQGILSENDIIEQS---REQ 698 AG+ + ++ K++ +++ + AA++EQ ++G+ Q I+ +++ +Q+ EQ Sbjct: 434 EAGTTMTEVVDSVKRVTDIMSEILAASQEQ---SAGIEQVNTAIVQMDEVTQQNAALVEQ 490 Query: 699 VSTLYEELWDAARQLESSVSRFRV 722 + L D A L + VS F++ Sbjct: 491 AAAAASSLRDQATNLSTVVSVFKL 514 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.127 0.339 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 997,500 Number of extensions: 34746 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 13 Length of query: 725 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 636 Effective length of database: 707,092 Effective search space: 449710512 Effective search space used: 449710512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)