BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3741.p (739 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095906|ref|YP_001100981.1| putative composite two componen... 399 e-112 gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Hermin... 216 2e-57 gi|134094187|ref|YP_001099262.1| putative chemotaxis protein Che... 159 5e-40 >gi|134095906|ref|YP_001100981.1| putative composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein [Herminiimonas arsenicoxydans] Length = 1969 Score = 399 bits (1025), Expect = e-112, Method: Compositional matrix adjust. Identities = 241/628 (38%), Positives = 365/628 (58%), Gaps = 57/628 (9%) Query: 148 MHEEIDPLLLPVFLEEAQELITGIGETLLALPAAEHRGVADASLLAELARPLHTLKGSAR 207 + +EID LLPVF+EE +++ +G+ L A + + DA+L + R LHT+KGSAR Sbjct: 1177 IKDEIDIDLLPVFIEEGSDMLPQMGQALRAW----QQNLGDAALPQSVLRILHTVKGSAR 1232 Query: 208 MVGARHLSRCLHDMETTLQRLALDDAVQESGSLAALLALYDQAIEQFNTLEQGLAV---S 264 M GA L + +H+MET ++ + + ++ LLA +D ++ F L+ A+ + Sbjct: 1233 MAGAMLLGQHMHEMETRIENIT-HAGYPSAAAVEDLLARHDHGLQLFEQLQNPDAIRPQA 1291 Query: 265 SSPARRDG-------------------LADSQLT------------------APLIRIRT 287 S+ A D + D++ T PL+R+R Sbjct: 1292 SAAAVTDEENTPAPAAAELPVIQSLMPVTDNRTTPIAAEAAAASRTPATATPVPLVRVRA 1351 Query: 288 TLLDKLLNQVGEVSIRRAQLDNEITALQGDARALGEQLGKLAEQL--------GQLQRHC 339 +LD+L+NQ GEVSI R++L+ E+ L+ L E + +L EQL Q+ H Sbjct: 1352 DILDRLVNQAGEVSISRSKLETEVGTLRASMGELSENVIRLREQLREIEMQAESQITSHM 1411 Query: 340 GDTPWVAPPGQDPDSAAPL-ALAGSMQEALGEALQHQKQLLQRVLKTREDLRQQGRTTRE 398 G + + D L L M E++ + Q+ L + + DL Q R TR+ Sbjct: 1412 GVSSDREFDPLEFDRFTRLQELTRMMAESVNDVGSVQQNLSRTIDSASTDLTNQARLTRD 1471 Query: 399 LQQELMHARMVKFNSMESRMQHLARQVALETGKPLTLELSDYRLHIDRAILERLMGPLEH 458 LQQ+LM RMV+F S+ R+ + RQ A E K + L++ + +DR++LE++ GP EH Sbjct: 1472 LQQDLMRVRMVQFASISERLYRVTRQAAKEMDKRVNLDIRGSAVEVDRSVLEKMAGPFEH 1531 Query: 459 LLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRGLDLQAIRDKARQ 518 LLRNA VHGIE E RRAAGK +G+LRI+ EGNE VI SDDG+GL+L +IR KA Q Sbjct: 1532 LLRNAIVHGIESREKRRAAGKSETGELRIEIRQEGNEVVIHFSDDGQGLNLNSIRSKALQ 1591 Query: 519 RGLIEAQQ-ISEARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEVAALGGRMTVHSRA 577 GL++A+ +S+A + +LIF PGFST+ +++ LAGRG+GMDVVR+E A+LGGR+ + S Sbjct: 1592 NGLVKAEDALSDAEVTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRVAIASEP 1651 Query: 578 GRGVLFTLYLPLSLAVQHVCLLRHGQQPYAIPSTLIERVVQLRSDQAQDALQQRALEFNG 637 G+G FT++LPL+LAV V +L G + YAIPS L+E+V QL++ A + A+ + Sbjct: 1652 GKGAYFTIHLPLTLAVTQVVILSTGGKTYAIPSVLVEQVQQLKNGPLATAYNEGAVMWQS 1711 Query: 638 QRLALYPLHCLLDEPAHPAWPDPSDSAFALLIKRGDELMVIMADHVSGNREVVVKPVGPQ 697 QR+ ++ L LL + A P + +++K G + + + D + GNREVVVK +GPQ Sbjct: 1712 QRVPMHYLSALLGDT--DAAPVTQQYSPLMILKSGSDRVALHVDEILGNREVVVKNIGPQ 1769 Query: 698 VATLAGVVGATVLGDGQIVLIINPLLLS 725 ++ + G+ GATVLG G+IVLI+NP+ L+ Sbjct: 1770 LSRMIGIAGATVLGSGEIVLILNPVPLA 1797 >gi|134094526|ref|YP_001099601.1| chemotaxis protein cheA [Herminiimonas arsenicoxydans] Length = 697 Score = 216 bits (551), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 207/354 (58%), Gaps = 8/354 (2%) Query: 378 LLQRVLKTREDLRQQGRTTRELQQELMHARMVKFNSMESRMQHLARQVALETGKPLTLEL 437 L +R+L + + Q R TR+LQ+ +M RM+ + + SR + R +A + GK + Sbjct: 342 LHERLLNS---VSQLTRNTRDLQEAVMSIRMMPMDYVFSRFPRMVRDLAGKLGKKIEFVT 398 Query: 438 SDYRLHIDRAILERLMGPLEHLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASHEGNEAV 497 +D+ ++ER++ PL HL+RN+ HGIE E R AAGK +GQL + ASH+G + Sbjct: 399 QGAATELDKGLIERIVDPLTHLVRNSIDHGIEMPEARTAAGKAPAGQLSLSASHQGGNII 458 Query: 498 IRVSDDGRGLDLQAIRDKARQRGLIEAQQISEARLAELIFEPGFSTSTQVSALAGRGVGM 557 I VSDDG GL+ + I KARQ+G+ + ++ + + +LIF PGFST+ V+ ++GRGVGM Sbjct: 459 IEVSDDGGGLNRERILAKARQKGMEVSNEMPDGDVWQLIFAPGFSTAEAVTDVSGRGVGM 518 Query: 558 DVVRAEVAALGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCLLRHGQQPYAIP-STLIERV 616 DVV+ + A+GG + + S G G ++ LPL+LA+ ++ G++ Y +P ++E + Sbjct: 519 DVVKRNITAMGGAVEIRSSKGFGTTISISLPLTLAILDGMSIKVGEEIYILPLGYVVESL 578 Query: 617 VQLRSDQAQDALQQRALEFNGQRLALYPLHCLLDEPAHPAWPDPSDSAFALLIKRGDELM 676 D + + Q + ++ G L L PL+ + D P + DPS+ +L G + Sbjct: 579 QPEPEDVKEISGQGKVVKVRGDYLPLIPLYKMFD--IEPNFTDPSEGIVVILESEGRKAA 636 Query: 677 VIMADHVSGNREVVVKPVGPQVATLAGVVGATVLGDGQIVLIIN-PLLLSGSRR 729 + + D + G ++VVVK + +AG+ GAT+LGDG + LII+ LL SR+ Sbjct: 637 LFI-DELVGQQQVVVKNLESNYRKVAGISGATILGDGGVSLIIDVAALLRSSRQ 689 >gi|134094187|ref|YP_001099262.1| putative chemotaxis protein CheA [Herminiimonas arsenicoxydans] Length = 609 Score = 159 bits (401), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/352 (30%), Positives = 181/352 (51%), Gaps = 15/352 (4%) Query: 387 EDLRQQGRTTRELQQELMHARMVKFNSMESRMQHLARQVALETGKPLTLELSDYRLHIDR 446 E L + R + ELQ+ + RM + + L R++A + GK + L++ +DR Sbjct: 270 ETLNRASRYSTELQRATLSTRMQPVGKLFQKFPRLVRELAKDLGKDVDLQIEGAETEVDR 329 Query: 447 AILERLMGPLEHLLRNAAVHGIEDAEVRRAAGKPVSGQLRIQASHEGNEAVIRVSDDGRG 506 +++ L PL H+LRN+ HGIED R A GK + ++A E + +I +SDDG+G Sbjct: 330 VVVDSLYDPLVHMLRNSLDHGIEDNATRTANGKSTKSVILLKAWQEASSVMIEISDDGKG 389 Query: 507 LDLQAIRDKARQRGLI--EAQQISEARLAELIFEPGFSTSTQVSALAGRGVGMDVVRAEV 564 ++ + +R KA +GLI A Q E L +L+F PGFST ++++GRGVGMDVV+ V Sbjct: 390 MNGEQLRAKAISKGLIADTAAQTQEEML-QLVFLPGFSTKEVANSVSGRGVGMDVVKTAV 448 Query: 565 AALGGRMTVHSRAGRGVLFTLYLPLSLAVQHVCLLRHGQQPYAIPSTLIERVVQLRSDQA 624 G +T+ S G G F++ LP+ L++ L+R A+P +++RVV+L D+ Sbjct: 449 EKHRGAITIDSTLGVGTRFSIRLPIELSIVPTMLVRSSDAALALPMAVVQRVVEL-PDEF 507 Query: 625 QDALQQRALEFNGQRLALYPLHCLLDEPAHPAWPDPSDSAFALLIKRGDELMVIMADHVS 684 + L G+ L P+ L + + ++ + ++ V Sbjct: 508 EHVGGAPVLRDQGRPL---PVRSLAGSLGYELGVEKVG-----IVISAPQPYILSVGAVE 559 Query: 685 GNREVVVKPVGPQVATLAGVVGATVLGDGQIVLIIN-PLLLSGSRRADGRAA 735 G ++V+KP+ T+ G+ G +G++VL++ LL G+R+ AA Sbjct: 560 GTADLVIKPM--TAITVPGIAGTARSAEGELVLVVGLSFLLEGARQTAKMAA 609 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,143,263 Number of extensions: 44377 Number of successful extensions: 204 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 3 Length of query: 739 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 650 Effective length of database: 707,092 Effective search space: 459609800 Effective search space used: 459609800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)