BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3738.p
         (373 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093556|ref|YP_001098631.1| choline monooxygenase [Herminii...   639   0.0  

>gi|134093556|ref|YP_001098631.1| choline monooxygenase
           [Herminiimonas arsenicoxydans]
          Length = 366

 Score =  639 bits (1647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 295/366 (80%), Positives = 327/366 (89%)

Query: 1   MSDLATFAKLARSNAQLPVHVYFDEPLYQRELKQLFQHGPRYVGHELMVPNAGDYSTLPW 60
           MSDLA  AKLARSNAQLPV+VYFDE L ++E++QLF+ GPRY GHELMVPN GD++TL W
Sbjct: 1   MSDLANLAKLARSNAQLPVNVYFDEALLKQEIQQLFRDGPRYAGHELMVPNVGDFATLAW 60

Query: 61  ENEGRMLVRNAQGIELLSNVCRHRQAKMLDGRGNTNNVVCPLHRWTYDLKGELIGAPHFG 120
           ENEGRMLVRN QGIELLSNVCRHRQAKM +GRG+ +N+VCPLHRWTYDLKGELIGAPHFG
Sbjct: 61  ENEGRMLVRNPQGIELLSNVCRHRQAKMFNGRGHASNIVCPLHRWTYDLKGELIGAPHFG 120

Query: 121 ETPCMNLSKTPLQSWNGLLFENNGVDIADKLKRLGVTRDLDFSGYLYDHTEVHECDYNWK 180
           ETPC+NLS TPLQ+WNGLLFE NGVD+A  L  LGVT+DLDFSGY+ DH EVH+C+YNWK
Sbjct: 121 ETPCLNLSNTPLQNWNGLLFERNGVDVAKILGNLGVTKDLDFSGYMLDHIEVHDCNYNWK 180

Query: 181 TFIEVYLEDYHVEPFHPGLGNFVSCSDLKWEFGRDYSVQTVGVNHGLIKSGSPTYGKWQE 240
           TFIEVYLEDYHVEPFHPGLG+FVSC DLKWEFG  YSVQTVGV++ L K GSP Y KWQE
Sbjct: 181 TFIEVYLEDYHVEPFHPGLGSFVSCDDLKWEFGDQYSVQTVGVHNALAKHGSPVYQKWQE 240

Query: 241 KLLQFSNGQPPKFGAIWLTLYPNIMVEWYPHVLVVSTLWPSGPQKTTNVVEFYYPEEIAL 300
           ++LQF  G+ P +GAIWLTLYPNIMVEWYPHVLVVST+WP GPQKT NVVEFYYPEEI L
Sbjct: 241 QILQFRKGEAPPYGAIWLTLYPNIMVEWYPHVLVVSTVWPDGPQKTRNVVEFYYPEEIVL 300

Query: 301 FERELVEAERAAYMETCVEDDEIAQRMDAGRRILMDRGTSEVGPYQSPMEDGMQHFHEWY 360
           FERE + AERAAYMETC EDDEIA RMDAGR+IL+DRG +EVGPYQSPMEDGMQHFHEWY
Sbjct: 301 FEREFIAAERAAYMETCEEDDEIALRMDAGRKILLDRGENEVGPYQSPMEDGMQHFHEWY 360

Query: 361 RQQLDV 366
           R+QLDV
Sbjct: 361 RRQLDV 366


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 795,372
Number of extensions: 34862
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 290
Effective length of database: 726,862
Effective search space: 210789980
Effective search space used: 210789980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)