BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3736.p
         (315 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093559|ref|YP_001098634.1| geranyltranstransferase [Hermin...   417   e-118
gi|134095950|ref|YP_001101025.1| octaprenyl diphosphate synthase...    98   6e-22

>gi|134093559|ref|YP_001098634.1| geranyltranstransferase
           [Herminiimonas arsenicoxydans]
          Length = 294

 Score =  417 bits (1073), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/299 (74%), Positives = 246/299 (82%), Gaps = 9/299 (3%)

Query: 16  FADWMRQVQGGMEDVLDRFLVPTSKVPARLHQAMRYTAMDGGKRVRPLLVYAAGEVFDTP 75
           F  WM+  QG ME  L + L P +  PARLH+AM Y  +DGGKRVRPLLVYAAG +FD  
Sbjct: 4   FDGWMKATQGEMELALVQHLPPVALTPARLHEAMHYAVLDGGKRVRPLLVYAAGALFDAD 63

Query: 76  PALLDRAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHVQYDEATALLVGDALQAQAF 135
            A L RAAAAVEMIH YSLVHDDMPCMDDDALRRGKPTVHV+YDEA ALLVGDALQ+QAF
Sbjct: 64  AAELARAAAAVEMIHAYSLVHDDMPCMDDDALRRGKPTVHVKYDEACALLVGDALQSQAF 123

Query: 136 ETLSAPLASEPGLSVADLPARQLRMVQLLAQASGSVGMCGGQAIDLASVGMTLSLAELEQ 195
           + L+     + G+     P RQL MV+LLA+ASGS+GMCGGQAIDLASVG+ LSL ELEQ
Sbjct: 124 DVLA-----DGGID----PVRQLAMVRLLAKASGSLGMCGGQAIDLASVGLNLSLEELEQ 174

Query: 196 MHRLKTGALLRAAVLLGALGGKDLSADESAALDDYACAIGLAFQVVDDILDATADSATLG 255
           MHRLKTGALLR +VLLGAL GK LSA+E+ ALD YA AIGLAFQVVDD+LDATADSATLG
Sbjct: 175 MHRLKTGALLRVSVLLGALAGKSLSAEETQALDSYAAAIGLAFQVVDDVLDATADSATLG 234

Query: 256 KTAGKDAADNKPTYVSILGLAQSQALADKLRATAHAALAPFGQKARRLRELADLIVQRK 314
           KTAGKDAADNKPTYVSILGL QS+ LA+KLR  AH AL  FG+KARRLRELADLIVQRK
Sbjct: 235 KTAGKDAADNKPTYVSILGLEQSRTLAEKLRNDAHRALEQFGEKARRLRELADLIVQRK 293


>gi|134095950|ref|YP_001101025.1| octaprenyl diphosphate synthase
           [Herminiimonas arsenicoxydans]
          Length = 329

 Score = 97.8 bits (242), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 20/227 (8%)

Query: 43  ARLHQAMRYTAMDGGKRVRPLLVYAAGEVFDTPPALLDRAAAAVEMIHVYSLVHDDMPCM 102
           A ++Q   Y    GGKR+RP+LV                 AA VE IH  +L+HDD+  +
Sbjct: 37  ALVNQIADYIISAGGKRIRPVLVLLMANALGYRGTHQYDLAAVVEFIHTATLLHDDV--V 94

Query: 103 DDDALRRGKPTVHVQYDEATALLVGDALQAQAFETLSAPLASEPGLSVADLPARQLRMVQ 162
           D+  LRRG+ T +  +  A ++LVGD L ++AF+ +              +    +R +Q
Sbjct: 95  DESELRRGRKTANALFGNAASVLVGDFLHSRAFQMM--------------VTVGNIRAMQ 140

Query: 163 LLAQASGSVGMCGGQAIDLASVG-MTLSLAELEQMHRLKTGALLRAAVLLGALGGKDLSA 221
           +LA A+  +    G+ + L ++    +S     Q+ R KT  L  AA  LGAL     S 
Sbjct: 141 ILADATNVI--AEGEVLQLLNMHDPDISEERYTQVIRSKTAKLFEAAAQLGALIAG-ASE 197

Query: 222 DESAALDDYACAIGLAFQVVDDILDATADSATLGKTAGKDAADNKPT 268
           DE  A  +Y  ++G AFQ++DD+LD +  +  +GK  G D  + K T
Sbjct: 198 DEIEAAAEYGRSLGTAFQLIDDVLDYSGHAEDIGKNVGDDLREGKAT 244


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 540,086
Number of extensions: 20425
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 233
Effective length of database: 730,157
Effective search space: 170126581
Effective search space used: 170126581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)