BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3735.p
         (621 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093560|ref|YP_001098635.1| 1-deoxy-D-xylulose-5-phosphate ...  1050   0.0  

>gi|134093560|ref|YP_001098635.1| 1-deoxy-D-xylulose-5-phosphate
           synthase [Herminiimonas arsenicoxydans]
          Length = 609

 Score = 1050 bits (2715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/609 (84%), Positives = 566/609 (92%)

Query: 12  LRRLTRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFNTPEDRIVWDVG 71
           +R  TR QLK LA+ELR F+L+SVS TGGHLSSNLGTVELTIALH VFNTPEDRI+WDVG
Sbjct: 1   MRHFTRPQLKQLADELRAFVLESVSATGGHLSSNLGTVELTIALHNVFNTPEDRIIWDVG 60

Query: 72  HQTYPHKILTGRRERMATLRQQEGISGFPRRIESQYDTFGTAHSSTSISAALGMALAAKT 131
           HQTYPHKILTGRR++M +LRQ++GISGFPRR ES YDTFGTAHSSTSISAALGMALAA+T
Sbjct: 61  HQTYPHKILTGRRDQMHSLRQRDGISGFPRRDESVYDTFGTAHSSTSISAALGMALAART 120

Query: 132 QGSERHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISPPVGALNRYLAR 191
           +G  RHAIAVIGDGAMTAGMAFEALNNAG+H+D+ LLVILNDNDMSISPPVGALNRYLAR
Sbjct: 121 KGENRHAIAVIGDGAMTAGMAFEALNNAGIHDDINLLVILNDNDMSISPPVGALNRYLAR 180

Query: 192 LMSGKFYATARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFNYIGPIDGHDLD 251
           LMSG+FYA A++VGK+VLP PV ELAKR EEHAKGM+VPATMFEEFGFNYIGPIDGHDLD
Sbjct: 181 LMSGQFYAAAKNVGKTVLPAPVRELAKRFEEHAKGMIVPATMFEEFGFNYIGPIDGHDLD 240

Query: 252 SLIPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEGIKPSAGGKLTY 311
           SLIPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKF+P+EGIKP+A  K+TY
Sbjct: 241 SLIPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFDPAEGIKPAAASKVTY 300

Query: 312 TQVFGQWLCDMGAADDKLVGITPAMREGSGMVAFEKAFPNRYYDVGIAEQHAVTFAAGMA 371
           T VFG WLCDM AADDKL+GITPAMREGSGMV FE+ FP RYYDVGIAEQHAVTFAAGMA
Sbjct: 301 TSVFGDWLCDMAAADDKLIGITPAMREGSGMVEFERRFPGRYYDVGIAEQHAVTFAAGMA 360

Query: 372 CEGMKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGATHAGNYDLAFLR 431
           CEG+KPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGATHAGNYD+A+LR
Sbjct: 361 CEGLKPVVAIYSTFLQRAYDQLIHDVALQNLDVTFALDRAGLVGADGATHAGNYDIAYLR 420

Query: 432 CIPNMVVMAASDENECRQMLSTAYQYPGPAAVRYPRGAGIGAAVEKTLDTLPLGRGEIRR 491
           CIPNMVVMAASDENECRQMLST + Y GPAAVRYPRG GIGA VEK L T+PLG GEIRR
Sbjct: 421 CIPNMVVMAASDENECRQMLSTGFHYNGPAAVRYPRGGGIGAKVEKNLATIPLGTGEIRR 480

Query: 492 QGKDVAILAFGSLLAPALGAGDKLDATVANMRFIKPLDVELVRQLAASHEALVTVEEGCI 551
           +GK +AILAFG+++AP+L AG++LDATVANMRF+KPLDVEL+++LAA+HEA+VTVEEGCI
Sbjct: 481 EGKRIAILAFGTMVAPSLRAGEELDATVANMRFVKPLDVELLKRLAATHEAIVTVEEGCI 540

Query: 552 MGGAGAAVSEALAAAGINKPILHLGLPDRFIDHGDVAQLLAQCGLDADGIAQSIAQRFGK 611
           MGGAGAAV+EALAAAGI KP+L+LGLPD+FIDHGD  QLLA CGLDA GIA +I QRFGK
Sbjct: 541 MGGAGAAVAEALAAAGIVKPLLNLGLPDQFIDHGDAQQLLAMCGLDAAGIAATIRQRFGK 600

Query: 612 DQPKLVVNN 620
            +P+LVVNN
Sbjct: 601 GEPRLVVNN 609


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,233,290
Number of extensions: 53969
Number of successful extensions: 155
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 534
Effective length of database: 713,682
Effective search space: 381106188
Effective search space used: 381106188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)