BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3734.p
         (185 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093562|ref|YP_001098637.1| putative Cob(I)yrinic acid a,c-...   277   2e-76

>gi|134093562|ref|YP_001098637.1| putative Cob(I)yrinic acid
           a,c-diamide adenosyltransferase [Herminiimonas
           arsenicoxydans]
          Length = 187

 Score =  277 bits (709), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 133/184 (72%), Positives = 157/184 (85%), Gaps = 1/184 (0%)

Query: 2   MGNRLSRIATRTGDDGSTGLGDGSRVGKDNLRIQALGDVDELNSHLGVLLCETLPASLRE 61
           MGNRLS+IATRTGD+G+TGLGDGSR+ KD LR+ A+GDVDELNSH+G+LLCE LP +LRE
Sbjct: 1   MGNRLSKIATRTGDNGTTGLGDGSRIDKDALRVHAMGDVDELNSHIGLLLCEDLPPALRE 60

Query: 62  ELVSIQHDLFDLGGELCIPGYTVLAEAHLARLDALLEKYNATLPPLQEFILPGGSRTAAL 121
           EL+SIQHDLFD+GGELCIPGYT++ +A + RLDALL KYNA LP L+EFILP GSR A+ 
Sbjct: 61  ELISIQHDLFDMGGELCIPGYTMIHDAQVTRLDALLAKYNADLPALKEFILPAGSRAASQ 120

Query: 122 AHVCRTVCRRAERSVVMLEKAEAGVNAPARQYLNRLSDLCFVLARVLNREAGGQDVLWQK 181
           +HVCRTVCRRAER++V L KAE  +N   RQY+NRLSDL FVL+RVLNR AG  DVLW+K
Sbjct: 121 SHVCRTVCRRAERTIVSLGKAEK-MNDNPRQYMNRLSDLLFVLSRVLNRHAGDGDVLWEK 179

Query: 182 GRER 185
            R R
Sbjct: 180 DRVR 183


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 315,316
Number of extensions: 11429
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 109
Effective length of database: 749,927
Effective search space: 81742043
Effective search space used: 81742043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)