BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3732.p (296 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093563|ref|YP_001098638.1| LysR family transcriptional reg... 443 e-126 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 85 4e-18 gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herm... 83 1e-17 gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 83 2e-17 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 78 4e-16 >gi|134093563|ref|YP_001098638.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 299 Score = 443 bits (1140), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/295 (71%), Positives = 245/295 (83%), Gaps = 1/295 (0%) Query: 1 MATRLPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSI 60 MA+RLPPVHALSAFEAAARH SFAVAAEELCITPSA SHRIRLLEDFVGERLF RDGRS+ Sbjct: 1 MASRLPPVHALSAFEAAARHGSFAVAAEELCITPSAFSHRIRLLEDFVGERLFLRDGRSV 60 Query: 61 GLSEFGRRYLDVVRSALRTLTDFPMPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRH 120 L+EFGRRYLDVVR AL +L DFP+PHR A+ Q K+KV +PPTFAR+L +P + +F H Sbjct: 61 SLTEFGRRYLDVVRGALSSLADFPLPHRYASTQLKVKVTVPPTFARYLFLPHLHEFMALH 120 Query: 121 PEIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPL 180 PEI +E YLSVPLYD+SLSE+D+E+RFGAG YP+I+TEKLF EP F VASP YL+ + L Sbjct: 121 PEISIETYLSVPLYDMSLSETDIEVRFGAGKYPDIVTEKLFREPVFPVASPAYLEQIGKL 180 Query: 181 KTPTDLQHATLLRSALEPWQPWFEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 P DLQ A LLRSALEPWQPWFE AGL +W EPS+GLR+DDLGLLLEAV+HGYG+ LTR Sbjct: 181 NVPADLQKAQLLRSALEPWQPWFEMAGL-DWQEPSTGLRIDDLGLLLEAVKHGYGVALTR 239 Query: 241 QHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFINWMQNAFRN 295 QHFA +++A GEIV LFD++L TP HAYY+VY+R VRERPEV ++WM F Sbjct: 240 QHFAADMIASGEIVSLFDLQLTTPQHAYYLVYDRHVRERPEVALMLDWMMERFST 294 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 85.1 bits (209), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 9/285 (3%) Query: 11 LSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSIGLSEFGRRYL 70 + F A SF A L I+ + +S + +LED +G RL R R + L+E G Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 71 DVVRSALRTLTDFPMPHRNAAMQPK--IKVMLPPTFARHLLMPRIADFTQRHPEIVVELY 128 + L + + +A P+ +KV +P +F + P + ++ +R+PE+ +++ Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 129 LSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLKTPTDL-Q 187 L+ DL D+ IR G +I KL + ASP YL+ +TP DL Q Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATDRIVLCASPAYLQVHGAPQTPEDLKQ 180 Query: 188 HATLLRSALEPWQPW-FEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIGLTRQHF--A 244 HA L S W F + V +R ++ +L A G G+ + + HF A Sbjct: 181 HACLNYSYSSSGDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGL-IWQPHFIVA 239 Query: 245 EELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFINWM 289 +++ A G +VEL T Y +Y +V TF++++ Sbjct: 240 DDVQA-GRLVELMKDESDT-ELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134095236|ref|YP_001100311.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 83.2 bits (204), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 112/258 (43%), Gaps = 15/258 (5%) Query: 11 LSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSIGLSEFGRRYL 70 L F AA +SF AA L +P ++ I+ LE GE LF+R R + ++ FG L Sbjct: 8 LRIFRVAAESSSFRDAAVRLGTSPQGVTRAIQQLEQHYGEVLFHRSTRQVRITAFGEGLL 67 Query: 71 DVVRSALRTLTDF---PMPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRHPEIVVEL 127 D VR AL D P + A++ +++ P + ++P + RHP+I +++ Sbjct: 68 DQVRPALERFEDLWRTPGSDQQASLSGTVRITAPHSLGTRAVLPALERVAARHPDITLDV 127 Query: 128 YLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLKTPTDLQ 187 LS + + DV IR G + K + VA+P +K + P ++ Sbjct: 128 RLSDRISNTVDEGIDVGIRVGFMRDSRFVARKAADMKLPIVAAPRLIKK---VGVPENID 184 Query: 188 HATLLRSAL-------EPWQPWFEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIGLTR 240 + L + + PW PW AG ++W + L D+ + + A G Sbjct: 185 ALSSLPATVALDINTGRPW-PWHFKAG-RQWTPAAPTLVADNADMEMGAALAGIAFAQLA 242 Query: 241 QHFAEELLARGEIVELFD 258 + A +A G++V + + Sbjct: 243 DYMAAPYIASGKLVRVLE 260 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/294 (25%), Positives = 119/294 (40%), Gaps = 6/294 (2%) Query: 5 LPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSIGLSE 64 + + + AF A H+SFA AA L +TP + RI LE +G RL +R R + L+E Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 65 FGRRYLDVVRSALRTL--TDFPMPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRHPE 122 G YL+ R L L + + + + + + P +F R + P +F ++HP Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 123 IVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLKT 182 + + L+ + DL D+ IR G PN + KL +P Y K KT Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAANKRVVCGTPDYFKKHGKPKT 180 Query: 183 PTDLQHATLLRSALEPWQP---WFEAAGLKEWVEPSSGLRVDDLGLLLEAVRHGYGIGLT 239 DL L L+ Q +F G V L +D LL + G GI Sbjct: 181 LDDLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAWR 240 Query: 240 RQHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFINWMQNAF 293 + L G + + D P + VY + +V FI+ ++ + Sbjct: 241 SVWEIQSQLESGTLETVLD-DFAIPEYDIMAVYPQQRNVPAKVRLFISHLKTMY 293 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 78.2 bits (191), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 77/295 (26%), Positives = 129/295 (43%), Gaps = 8/295 (2%) Query: 5 LPPVHALSAFEAAARHNSFAVAAEELCITPSALSHRIRLLEDFVGERLFYRDGRSIGLSE 64 + + L+ F + S A AA+EL +TP ++S R+ +E + RL R R I L+ Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 65 FGRRYL-DVVR--SALRTLTDFPMPHRNAAMQPKIKVMLPPTFARHLLMPRIADFTQRHP 121 G YL D R + L L + + N + +K+ F R + P+++ F + +P Sbjct: 61 EGEIYLADGARLVAELEAL-EQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYP 119 Query: 122 EIVVELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPGYLKTLPPLK 181 E+ V+L+L+ +L D +IRFG + K+ + ASP YLK Sbjct: 120 EVDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIADNRRLVCASPAYLKNHGIPL 179 Query: 182 TPTDLQ--HATLLRSALEPWQPWFEAAGLK-EWVEPSSGLRVDDLGLLLEAVRHGYGIGL 238 TP DLQ + LLR + E + W ++G K E V+ L +D G GI + Sbjct: 180 TPRDLQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVV 239 Query: 239 TRQHFAEELLARGEIVELFDVRLRTPPHAYYVVYERAVRERPEVDTFINWMQNAF 293 + L G + + + + P Y+V+ + +++M AF Sbjct: 240 RSEWDVAPYLRSGRLRTVLE-DWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAF 293 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 592,438 Number of extensions: 24717 Number of successful extensions: 88 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 8 Length of query: 296 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 215 Effective length of database: 733,452 Effective search space: 157692180 Effective search space used: 157692180 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)