BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3731.p (495 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093565|ref|YP_001098640.1| glycolate oxidase subunit glcD ... 842 0.0 gi|134094432|ref|YP_001099507.1| putative oxidoreductase [Hermin... 152 2e-38 gi|134095897|ref|YP_001100972.1| putative D-lactate dehydrogenas... 84 1e-17 gi|134096019|ref|YP_001101094.1| putative fusion protein of flav... 68 9e-13 >gi|134093565|ref|YP_001098640.1| glycolate oxidase subunit glcD [Herminiimonas arsenicoxydans] Length = 512 Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/494 (81%), Positives = 446/494 (90%), Gaps = 1/494 (0%) Query: 3 APAQPS-FAPARQREVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPETE 61 APA + F A QR VVDALR V+P CVLF+EEDTRPYECDGLAAY QLPMVVVLP E Sbjct: 19 APASTAPFTAAHQRTVVDALRAVLPEQCVLFNEEDTRPYECDGLAAYAQLPMVVVLPLNE 78 Query: 62 AQVVAILRTCHALQVQIVPRGAGTGLSGGAMPIADGVVLSTAKFNQILKMDKYSRTAVVQ 121 A V+A+L+ C L V++VPRGAGTGLSGGA+PIADG+VLSTA+ N+I+K+D Y+RTAVVQ Sbjct: 79 AHVIAVLKVCRDLSVRVVPRGAGTGLSGGALPIADGIVLSTARLNKIVKVDAYARTAVVQ 138 Query: 122 PGVRNLAISEAAAPHGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVLRVRMV 181 PGVRNLAISEA A GLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNV+RVR+V Sbjct: 139 PGVRNLAISEAVASLGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVMRVRVV 198 Query: 182 TIEGDVVELGSGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVV 241 TIEGDV+ELG+ ALDAPGLDLL+VF+GSEGMLG+VTEVTVKL+PKP+ ARVI+ASFDDVV Sbjct: 199 TIEGDVIELGNAALDAPGLDLLSVFVGSEGMLGIVTEVTVKLIPKPKLARVILASFDDVV 258 Query: 242 KGGNAVANVIAAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTTEEVEEE 301 KGGNAVA+VIAAGIIPAGLEMMDKTS+RMVEPFVKAGYDIDAEAILLCESDG EEVEEE Sbjct: 259 KGGNAVASVIAAGIIPAGLEMMDKTSTRMVEPFVKAGYDIDAEAILLCESDGIPEEVEEE 318 Query: 302 IGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKQLAQ 361 I RMT+VL SGATAIA SQ EAERL+FWSGRKNAFPAAGRISPDYYC+DGTIPR++LA+ Sbjct: 319 IARMTEVLKHSGATAIAVSQDEAERLKFWSGRKNAFPAAGRISPDYYCIDGTIPRRRLAE 378 Query: 362 VLLGIAEMEKKYGLRCANVFHAGDGNLHPLILFDANLADEFHRAELFGAEILELCVEVGG 421 VL GIA+ME KYGLRCANVFHAGDGNLHPLILFDAN EFHRAELFGAEILE+CV GG Sbjct: 379 VLQGIAQMEVKYGLRCANVFHAGDGNLHPLILFDANQEGEFHRAELFGAEILEMCVAFGG 438 Query: 422 TITGEHGVGIEKINSMCVQFSPAERESFFKLKRAFDPPFLLNPDKAIPTLHRCAEYGKMH 481 TITGEHGVG+EKIN MCVQFS AE ++F +KRAFDP LLNPDKAIPTL RCAEYGKMH Sbjct: 439 TITGEHGVGLEKINQMCVQFSRAEMDAFLSVKRAFDPLSLLNPDKAIPTLQRCAEYGKMH 498 Query: 482 VQRGQLRFPDLPRF 495 V+RG L+FPDLPRF Sbjct: 499 VKRGMLKFPDLPRF 512 >gi|134094432|ref|YP_001099507.1| putative oxidoreductase [Herminiimonas arsenicoxydans] Length = 469 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 134/475 (28%), Positives = 217/475 (45%), Gaps = 29/475 (6%) Query: 15 REVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPETEAQVVAILRTCHAL 74 + +DA R + A VL ++T Y D + VV P +V AI+R CH Sbjct: 2 KAFLDACRHAIGAQYVLTAADETAAYLTDWRRRFTGSAFAVVKPACTEEVAAIVRLCHQF 61 Query: 75 QVQIVPRGAGTGLSGGAMPIADG--VVLSTAKFNQILKMDKYSRTAVVQPGVRNLAISEA 132 V IVP+G TGL G++P A +VLS + N+I +D + T V+ G + +A Sbjct: 62 HVPIVPQGGNTGLVLGSIPDASNTAIVLSLTRLNRIRAIDSVNNTMTVESGCILQNVQQA 121 Query: 133 AAPHGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVLRVRMVTIEGDVVE-LG 191 AA G + +S+ +CTIGGN++ N+GG L+YG L + +VT +G++ L Sbjct: 122 AADAGRLFPLSLASEGSCTIGGNLSSNAGGTAVLRYGNARELCLGLEVVTPQGELWNGLR 181 Query: 192 SGALDAPGLDLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVKGGNAVANVI 251 D G DL ++IG+EG LG++T +KL P P+A R +A+ ++ +A ++ Sbjct: 182 GLRKDNTGYDLRDLYIGAEGTLGIITAAVLKLSPLPKAQRTALAA----LRSPDAALRLL 237 Query: 252 AAGIIP-----AGLEMMDKTSSRMVE---PFVKAGY-DIDAEAILLCESDGTTEE----- 297 + G E+M +V P + + + A+ +LL SD +EE Sbjct: 238 TLAQMRCNSALTGFELMSAFCLTLVGRHFPQMHLSFREQHAQYVLLELSDSESEEHANTL 297 Query: 298 VEEEIGRMTDVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRK 357 +EE IG D L + S A+ W R++ P A D ++P Sbjct: 298 LEELIG---DALQQDIVQDAIVATSLAQSAALWDIREH-IPLAQAAEGKNIKHDVSLPIS 353 Query: 358 QLAQVLLGI-AEMEKKY-GLRCANVFHAGDGNLHPLILFDANLADEFHRAELFGAE--IL 413 + + A +++ + G+R H GDGNLH + D A+ + Sbjct: 354 VIGDFIRSTDALLQQAFPGVRMVTFGHLGDGNLHYNVAHPEQETDAGFMAQQTTVNRVVH 413 Query: 414 ELCVEVGGTITGEHGVGIEKINSMCVQFSPAERESFFKLKRAFDPPFLLNPDKAI 468 + GG+I+ EHG+G K + S E + +K+A DP ++NP K + Sbjct: 414 DNVHSFGGSISAEHGIGALKHEEILRYKSAVEIQLMRAIKQALDPQNIMNPGKLL 468 >gi|134095897|ref|YP_001100972.1| putative D-lactate dehydrogenase [Herminiimonas arsenicoxydans] Length = 999 Score = 84.3 bits (207), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 8/181 (4%) Query: 9 FAPARQR---EVVDALRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPETEAQVV 65 FAP R + LR+ + VLF D Y D + Y+ +P+ VV+P +A ++ Sbjct: 8 FAPTHARGTSPLAKRLRKELRGD-VLFGNADRGRYATDA-SIYQIMPIGVVVPRDQADLL 65 Query: 66 AILRTCHALQVQIVPRGAGTGLSGGAMPIADGVVLSTAKF-NQILKMDKYSRTAVVQPGV 124 L + ++ RG GT G + + +V+ ++K+ N I+ D RT V+PG+ Sbjct: 66 LCLDIARSENAPVLARGGGTSQCG--QTVGEALVIDSSKWLNNIVDFDPEKRTVTVEPGM 123 Query: 125 RNLAISEAAAPHGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVLRVRMVTIE 184 ++ PHG+++ D S+ CTIGG NS G ++YG VHNVL + V + Sbjct: 124 VLDHLNAWLKPHGVWFPVDVSTAAQCTIGGMAGNNSCGSRSIEYGNMVHNVLAIDAVLAD 183 Query: 185 G 185 G Sbjct: 184 G 184 Score = 75.5 bits (184), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 117/283 (41%), Gaps = 21/283 (7%) Query: 201 DLLAVFIGSEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVKGGNAVANVIAAGIIPAGL 260 +L + +GSEG L ++T+KL P P+ + + +F KG +A +++ + P + Sbjct: 253 NLAHILVGSEGTLAFSRQLTLKLAPLPKHKVLGVINFPTFYKGMDAAQHIVK--LNPTAV 310 Query: 261 EMMDKT------SSRMVEPFVKAGYDIDAEAILLCESDGTTEEVEEEIGR-----MTDVL 309 E++D+T ++ P ++ +AILL E G + E M+D L Sbjct: 311 ELVDRTMIDLSLNNPAFRPVIEKALVGSPQAILLVEFAGDDKAALLEKLAALADLMSD-L 369 Query: 310 NASGATAIACSQSEAERLRFWSGRKNAF----PAAGRISPDYYCMDGTIPRKQLAQVLLG 365 + G+ +E + L W RK G P + D +P LA+ Sbjct: 370 SLPGSVVNMVDANEQKSL--WDVRKAGLNIMMSMKGDGKPVSFIEDCAVPLVHLAEYTDR 427 Query: 366 IAEMEKKYGLRCANVFHAGDGNLHPLILFDANLADEFHRAELFGAEILELCVEVGGTITG 425 + E+ KY HA G LH + D D E L E G +G Sbjct: 428 LTEVFHKYHTEGTWYAHASVGTLHVRPILDMR-RDGAASMRKIAEEASALVREYKGAYSG 486 Query: 426 EHGVGIEKINSMCVQFSPAERESFFKLKRAFDPPFLLNPDKAI 468 EHG G+ + + Q+ P +F ++K FDP NPDK + Sbjct: 487 EHGDGLCRGEWVAWQYGPHINHAFSEIKNLFDPDNRFNPDKIV 529 >gi|134096019|ref|YP_001101094.1| putative fusion protein of flavin-containing oxidoreductase and iron-sulfur-containing oxidoreductase [Herminiimonas arsenicoxydans] Length = 1332 Score = 68.2 bits (165), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 111/468 (23%), Positives = 177/468 (37%), Gaps = 87/468 (18%) Query: 21 LRRVVPAHCVLFDEEDTRPYECDGLAAYRQLPMVVVLPETEAQVVAILRTCHALQVQIVP 80 L R + FD + D + P VV+ P+ E ++ +++ C L + I+P Sbjct: 163 LGRYTAKDNIKFDGLSRVSHVTDATDWRVEYPFVVLTPDCENEMAGLVKGCIELGLTIIP 222 Query: 81 RGAGTGLSGGAMPIAD-GVVLSTAKFNQI----LKM----DKYSRTAVVQPGVRNLAISE 131 RG GTG +GGA+P+ V++T K + + M D+ T GV +++ Sbjct: 223 RGGGTGYTGGAIPLTPMSAVINTEKLEALGAVEMTMLPGVDREYATIYSGAGVVTKRVAD 282 Query: 132 AAAPHGLYYAPDPSSQIACTIGGNVAENSGGVHCLKYGLTVHNVLRVRMVTIEGDVVELG 191 AA G +A DP+S A IGGN+A N+GG + +G + N+ RMV GD +E+ Sbjct: 283 AAEKAGFVFAVDPTSAEASCIGGNIAMNAGGKKAVLWGTALDNLASWRMVDPNGDWLEVT 342 Query: 192 --------------------------SGALDAP------------------GLDLLAVFI 207 G ++ P G D+ F+ Sbjct: 343 RLEHNLGKIHDAPVAKFKLEWTHPGEKGRVNQPFKTETLEIVGRTFRKEGLGKDVTDKFL 402 Query: 208 G------SEGMLGVVTEVTVKLVPKPQAARVIMASFDDVVKGGNAVANVI---------- 251 EG G++T L P+ R + F +A+ +++ Sbjct: 403 SGLPGVQKEGCDGLITSARWILHKMPKHTRTVCLEF--FGHSRDAIPSIVEIKDFLDEQT 460 Query: 252 -AAGIIPAGLEMMDKTSSRMVEPFVKAGYDIDAEAILLCESDGTTE----EVEEEIGRMT 306 G I AGLE +D+ R V K+ + L + G E + E+ R+ Sbjct: 461 RKGGAILAGLEHLDERYLRAVGYATKSKRGTLPKMALFGDIVGDDENAVAQAASEVVRLA 520 Query: 307 DVLNASGATAIACSQSEAERLRFWSGRKNAFPAAGRISPDYYCMDGTIPRKQLAQVLLGI 366 + G A+ S R +FW R + + D IP ++ + GI Sbjct: 521 NTRVGEGFIAV----SPEARKKFWLDRARTAAISKHTNAFKINEDVVIPLDRMGEYSDGI 576 Query: 367 ----AEMEKKYGLRCANVFHA--GDGNLHPLILFDANLADEFHRAELF 408 E+ K L+ + HA GNL PL D +E AEL Sbjct: 577 ERINVELSIKNKLQFLDELHAFFAKGNL-PLGKSDDAEGEEIPAAELL 623 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 886,954 Number of extensions: 34378 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 5 Length of query: 495 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 409 Effective length of database: 716,977 Effective search space: 293243593 Effective search space used: 293243593 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)