BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3730.p
         (362 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093566|ref|YP_001098641.1| glycolate oxidase subunit glcE ...   389   e-110

>gi|134093566|ref|YP_001098641.1| glycolate oxidase subunit glcE
           [Herminiimonas arsenicoxydans]
          Length = 350

 Score =  389 bits (1000), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/351 (60%), Positives = 264/351 (75%), Gaps = 9/351 (2%)

Query: 13  ETVLVSFRERILAG----RPLQIRGGGTKDWYGQTPSGEVLDTRAYRGIVDYEPTELVIT 68
           E V+  F+E ILA     + L IRGGGTKDWYGQ P G++LDTRAY G+V+Y+PTELVIT
Sbjct: 2   EEVVEQFKETILAAGRQRQALCIRGGGTKDWYGQAPRGDILDTRAYSGVVEYDPTELVIT 61

Query: 69  ARCGTPLSEIDAALAEHNQMLAWEPPRFGGAATVGGMVAAGLSGPARASAGAVRDFVLGA 128
            R GTPL+E++  LA+ NQ LA++PP FG  AT+GGMVA GLSGP R + GA RDFVLGA
Sbjct: 62  VRAGTPLAEVEEVLAQQNQALAFDPPHFGPGATIGGMVACGLSGPRRVAVGAARDFVLGA 121

Query: 129 VLMDAQGEQLHFGGQVMKNVAGYDIARLLAGSMGTLGLILQVSLKVLPRPFASSTRVFEI 188
           VLMD +GE LHFGGQVMKNVAGYD++RLL GS+GTLGL+L+VSLKVLP+P+A ++   E+
Sbjct: 122 VLMDGKGEVLHFGGQVMKNVAGYDVSRLLTGSLGTLGLLLEVSLKVLPKPYAETSLRLEM 181

Query: 189 NQEGALRLLNQSAGQPLPLVASAWLDNVLTIRLAGAQAAVDSAIAKLGGTELIHSEDVWT 248
            +E A+R LN+  GQPLP+ ASAW D  L +RL+GA+AA+ +A   +GG E I  +D W 
Sbjct: 182 PEEEAIRRLNEWGGQPLPISASAWCDGALVLRLSGAKAAITAAQQTIGGEE-IAGDDFWL 240

Query: 249 DLREQTHPFFADPQAPLWRLSVPSVAPPIDLPGRQLIEWGGAQRWLRPDSRLDAVSIRAA 308
            LREQ++ FF      LWRLS+PSV PP+ L G QLIEWGGAQRWLR D+   ++   AA
Sbjct: 241 ALREQSNEFFTQSNV-LWRLSLPSVTPPLAL-GEQLIEWGGAQRWLRSDADAASIRAAAA 298

Query: 309 ALAVGGHASLHRGGDKAIGVFHPLQPAVEKIHRNLKQQFDPRGIFNPGRLY 359
                 HA+L RGGDK++GVF PL PAV +IH+N+K  FDP GIFNPGR+Y
Sbjct: 299 QAGG--HATLFRGGDKSVGVFQPLAPAVARIHQNMKNAFDPEGIFNPGRMY 347


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 721,475
Number of extensions: 30740
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 279
Effective length of database: 726,862
Effective search space: 202794498
Effective search space used: 202794498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)