BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3724.p
         (344 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-bindi...   118   4e-28

>gi|134093687|ref|YP_001098762.1| putative C4-dicarboxylate-binding
           periplasmic protein precursor [Herminiimonas
           arsenicoxydans]
          Length = 339

 Score =  118 bits (296), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 139/259 (53%), Gaps = 18/259 (6%)

Query: 18  SLASAAAATGLSSNAAHAAEFSFKYANNLPVTHPMNARA----KEMAAAIAEQSKGRIEL 73
           +LA + A T +S+ A    +FS    ++ P       RA    KE+   + E S+GRI +
Sbjct: 13  ALALSTAGTIVSAQATTVIKFSHVAGSDTP-----KGRAALHFKEL---LEESSRGRIRV 64

Query: 74  QLYPNNQLGTDTDMLSQVRAGAIDFFTLSPLILGTL-VPSAQISGIGFAFKDYSQVWPAM 132
            +YPNNQL  ++D L  ++ GA+     S   L        ++  + + F +   V    
Sbjct: 65  DVYPNNQLYKESDELEALQLGAVQMVAPSLAKLAQFGAQDFEVFDLPYLFANKDAVARVT 124

Query: 133 DGELGAHVRKQIESKSTL-FAFEKIWDNGYRQITNSTRPIKTADDLKGMKLRVPPSPLWT 191
           +G LG  + K+++SK  +  A+   WDNG++ I ++ +P+K   D  GMK+RV  SP+  
Sbjct: 125 EGILGKALLKRLDSKGMVGLAY---WDNGFK-IMSANKPLKMPADFVGMKMRVHSSPVLE 180

Query: 192 SMFKAFDAAPTSINFAEVYSALQTKIVEGQENPMAIISTAKLYEVQKYCSITNHMWDGFW 251
           S  +A  A P  ++  EVY AL++ +++G E+        KLY+VQ + +++NH + G  
Sbjct: 181 SQMRALGAIPQIMDANEVYFALRSGVIDGLESAPLNFYARKLYDVQSHITVSNHGYLGSA 240

Query: 252 FLGNKKSFERLPKDLQELM 270
            + NKK ++ LP DL++++
Sbjct: 241 VIVNKKFWDGLPFDLRKMI 259


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 567,827
Number of extensions: 20888
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 2
Length of query: 344
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 262
Effective length of database: 730,157
Effective search space: 191301134
Effective search space used: 191301134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)