BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3723.p (627 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094691|ref|YP_001099766.1| putative TRAP dicarboxylate tra... 97 2e-21 gi|134094235|ref|YP_001099310.1| putative TRAP-type large permea... 89 5e-19 gi|134093394|ref|YP_001098469.1| putative TRAP-type C4-dicarboxy... 55 8e-09 >gi|134094691|ref|YP_001099766.1| putative TRAP dicarboxylate transporter, putative membrane protein [Herminiimonas arsenicoxydans] Length = 406 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/365 (24%), Positives = 169/365 (46%), Gaps = 25/365 (6%) Query: 254 MSSLILLSVPLFVLLGSLLEQSGLAKTLIDFMAALLGHVRGGLQYVLLGAMFLVSGISGS 313 + + LL++PLF+++G+ + ++ A L + + + G L + + + + GS Sbjct: 14 LDNFTLLTIPLFIIMGAAIGKTRAAVDLYESAYRWMHKMPGSLGVANVIGCTVFAALCGS 73 Query: 314 KAADMAAIAPALFPEMKKRGSQPEELVALLSSSGAMTETIPPSLVLITIGAVCSVSITAL 373 A AAI PEM+KRG L+++ G + IPPS+ LI G + SI L Sbjct: 74 SPATCAAIGGMGIPEMRKRGYSDALATGLIAAGGTLGILIPPSITLIIYGLITEQSIGKL 133 Query: 374 FIGGLMPAAIATLAIAVVCWRRARRE----------PMPAVKRAPV--SLILKTLIAAIP 421 F+ G++P + A RA ++ + V APV S + +P Sbjct: 134 FLAGIIPGLLLAFCFAAYVVYRASKDIRLANEALAAGIDQVHTAPVVESYSWRERFEVLP 193 Query: 422 ALALPMLIRVAVI-----EGVATATEVATIGVAYTVVVGLVMHLFMRHLDFKRLYPMLIE 476 L LP +I +A+I G+ T +E+A IG +++ ++++ R +D + ++ + Sbjct: 194 RL-LPFVILIAIIMYAMYGGIGTPSEIAGIGAFGAMLLVVLVYKCYRWMDVRAIF---LG 249 Query: 477 AAALSGAILLIIGMATAMAWALTQSGFSAKLVAIMQGVPGGAAGFLLITIVIFIVLGSLL 536 A S I++II MA + ++ + + + +L ++ +VLG L Sbjct: 250 TAKESCMIMMIIAMAFLFTYVMSYLRITQSAAEWLAALEMSKWAYLFWVNILLLVLGCFL 309 Query: 537 EGIPAIVLFGPLLFPVARSLGVHDVHYAMVVILAMGIGLFAPPFGVGFYAACAIGKVSPD 596 + I++ P++ P + G + + +V+ + M +GL PP G+ + I +SPD Sbjct: 310 PPVAIILMVTPVILPGIIANGFDPIWFGIVLTINMELGLITPPVGLNLF---VIKGISPD 366 Query: 597 GVFNR 601 + NR Sbjct: 367 -IKNR 370 >gi|134094235|ref|YP_001099310.1| putative TRAP-type large permease component; putative membrane protein [Herminiimonas arsenicoxydans] Length = 564 Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 121/498 (24%), Positives = 212/498 (42%), Gaps = 97/498 (19%) Query: 215 VCVAAGIPIAFAFGTATMAY------LALATTAPLMIVVSRMDEGMSSLILLSVPLFVLL 268 V + +G P+AF+ + + L L L + +R+ MS+ LL++P F + Sbjct: 19 VFLLSGFPVAFSLAANGLFFGLVGIELGLLKPELLQALPNRIFGIMSNDTLLAIPFFTFM 78 Query: 269 GSLLEQSGLAKTLIDFMAALLGHVRGGLQYVLLGAMFLVSGISGSKAADMAAIAPALFPE 328 G +LE+SG+A+ L+D + L G +RGG+ Y ++ L++ +G AA + ++ P Sbjct: 79 GLILERSGMAEDLLDTIGQLFGPLRGGVAYAVIFVGALLAATTGVVAASVISMGLISLPV 138 Query: 329 MKKRGSQPEELVALLSSSGAMTETIPPSLVLITIGAVCSVSITALFIGGLMPAAIAT--- 385 M + G + ++++SG + + IPPSLVLI + S+ ++ P + T Sbjct: 139 MLRYGYDKKIATGVIAASGTLAQIIPPSLVLIVMADQLGRSVGDMYQAAFGPGLMLTAMY 198 Query: 386 ----LAIAVV--CW-----RRARREPMPAVKRAPVSL-------------ILKTLIAAIP 421 L I++V W AR P K +SL I + L+A+ P Sbjct: 199 AGYVLIISIVKPKWVPALPEEARNLRQPDGKSGVLSLFVLIVGTGIVCFVIEEMLLASNP 258 Query: 422 AL---------------------------ALPMLIRVA--------------------VI 434 L L +L R+A + Sbjct: 259 KLHADEGIIYAATLSIAGAFLVAYVNRKMKLGLLSRIAEQVVFVLVPPLALIFLVLGTIF 318 Query: 435 EGVATATEVATIGVAYTVVVGLVMHLFMRHLDFKRLYPMLIEAAALSGAILLIIGMATAM 494 G+AT TE +G A+ LV+ L R L + L + + LS ++ I + + Sbjct: 319 VGIATPTEGGGMG-AFGA---LVLALMNRRLTWALLKQAMNSTSRLSCFVMFI--LIGSS 372 Query: 495 AWALTQSGFSAKL--VAIMQGVPGGAAGFLLITIVIFIVLGSLLEGIPAIVLFGPLLFPV 552 + L G + L ++ +PGG AGFL++ ++F L L+ + PL+ PV Sbjct: 373 VFGLIFRGVNGDLWVEHLLTSLPGGTAGFLIVVNILFFGLAFFLDFFELAFILVPLVGPV 432 Query: 553 ARSLGVHDVHYAMVVILAMGIGLFAPPFGVGFYAACAIGKVSPDGVFNR--VWGYLAALV 610 A LG+ + + +++ + M PPFG +A + V+P V WG + +V Sbjct: 433 AEKLGIDLIWFGVLLSVNMQTSFMHPPFG---FALFYLRSVAPKEVKTSDIYWGSVPFVV 489 Query: 611 VAL----LVVAFVPWISI 624 + + L++AF IS+ Sbjct: 490 IQVIMVTLIIAFPQLISV 507 >gi|134093394|ref|YP_001098469.1| putative TRAP-type C4-dicarboxylate transport system, large permease component [Herminiimonas arsenicoxydans] Length = 644 Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 15/193 (7%) Query: 200 MGNYNLIVFFVLLIGVCVAAGIPIAFAF-GTATM-AYLALATTAP-------LMIVVSRM 250 M N +L + + L+ V + G P AF G + A+ A + P L ++V R Sbjct: 29 MTNGHLGLLMLALVVVAIMLGFPTAFTLMGMGVIFAWFAFHSRDPSLAVQQTLDLMVQRA 88 Query: 251 DEGMSSLILLSVPLFVLLGSLLEQSGLAKTLIDFMAALLGHVRGGL--QYVLLGAMF-LV 307 M++ +L+S+PLF+ +G L+E++ L + L + + + G L ++ A+F Sbjct: 89 YSVMANDVLISIPLFIFMGYLVERANLIEKLFKSLHIAMARIPGSLAVATIVTCAVFATA 148 Query: 308 SGISGSKAADMAAIAPALFPEMKKRGSQPEELVALLSSSGAMTETIPPSLVLITIGAVCS 367 +GI G+ M +A P M K G + +++ G + IPPS++LI GA Sbjct: 149 TGIVGAVVTLMGLLA---LPAMLKAGYSTQLAAGSITAGGCLGILIPPSVLLIVYGATAG 205 Query: 368 VSITALFIGGLMP 380 VS+ L+ G P Sbjct: 206 VSVVKLYAGAFFP 218 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.329 0.141 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 887,995 Number of extensions: 30526 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 4 Length of query: 627 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 540 Effective length of database: 713,682 Effective search space: 385388280 Effective search space used: 385388280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)