BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3722.p (256 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 145 2e-36 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 144 4e-36 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 123 9e-30 gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein... 122 2e-29 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 104 4e-24 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 145 bits (366), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 132/240 (55%), Gaps = 1/240 (0%) Query: 9 RVALVTGGAMGIGASISQQLAARGHTVLVA-DINLEAAASTAQALVAAGHRAAPVQMDLG 67 R+ALVTGG G+G +I +LAA G+ V+ + A + A+G+ D+ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVS 62 Query: 68 SADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGVMLAGQHA 127 DS A I+K+ G DVLVNNAG+ R F +W M N+ V + Sbjct: 63 DYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPV 122 Query: 128 ARLMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNSVAP 187 MV++ WGRI+NISS++ + G+T Y +KA + T+ +A+E+A+ +TVN+++P Sbjct: 123 CDGMVERGWGRIINISSVNAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISP 182 Query: 188 GPVETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGHVLPVDGG 247 G + T+M A+ + +PM R G +E+A V YLA+DE++++TG + ++GG Sbjct: 183 GYIGTKMVTAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTGANIAINGG 242 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 144 bits (364), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/240 (36%), Positives = 138/240 (57%), Gaps = 4/240 (1%) Query: 9 RVALVTGGAMGIGASISQQLAARGHTVLVADINLEAAASTAQALVAAGHRAAPVQMDLGS 68 +VALVTG + GIG +I+Q LA +G V+ + AA+ ++ L +G V +D+ Sbjct: 9 QVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGK---GVVLDVND 65 Query: 69 ADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGVMLAGQHAA 128 A + +I+K+ G +LVNNAG+ + + E W + N+T V + Sbjct: 66 AARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAVL 125 Query: 129 RLMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNSVAPG 188 R M+K + GRI+NI+S+ G AG+ Y +KA V ++R +A E+ ITVN VAPG Sbjct: 126 RGMMKAKHGRIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPG 185 Query: 189 PVETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGHVLPVDGGF 248 ++T MT+ + SEQ + + VP+ R G ++IA+AV +LA+ ++SYITG L V+GG Sbjct: 186 FIDTDMTKTL-SEQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVNGGM 244 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 123 bits (308), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 138/240 (57%), Gaps = 5/240 (2%) Query: 11 ALVTGGAMGIGASISQQLAARG-HTVLVADINLEAAASTAQALVAAGHRAAPVQMDLGSA 69 ALVTGG+ GIGA+I ++LAA G H ++ A+ + A++ A++A G A D+ A Sbjct: 4 ALVTGGSGGIGAAICKRLAADGLHVIVHANRGRDKASAICTAIIADGGSAEVAVFDITDA 63 Query: 70 DSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGVMLAGQHAAR 129 ++ A + + G VLVNNAG+ F W ++V++ G Q Sbjct: 64 EATKVALETL-LEAGPVQVLVNNAGIHSDAVFPGMTSAQWHSVIDVSLHGFFNVTQPLTM 122 Query: 130 LMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNSVAPGP 189 M++ RWGRI+N+SSI+ + G+ Y +K A+ + T+ +A+ELA GITVN+VAPG Sbjct: 123 PMIRTRWGRIINVSSIAAVTGNRGQVNYSAAKGALHSATKSLALELASRGITVNAVAPGI 182 Query: 190 VETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGHVLPVDGGFM 249 + T M + ++ ++ +VPM R G +E+A + +LA+ ++YI+G ++ ++GG + Sbjct: 183 IATGMIEEAFDDKAIQN---IVPMKRAGKPEEVADLIGFLASPNAAYISGQIISINGGMI 239 >gi|134095523|ref|YP_001100598.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 240 Score = 122 bits (305), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 10/245 (4%) Query: 9 RVALVTGGAMGIGASISQQLAARGHTVLVA-DINLEAAASTAQALVAAGHRAAPVQ-MDL 66 + ALV+GG G+GA+I+ L + G+ V V N + AA + + + PV D+ Sbjct: 3 KTALVSGGTRGLGAAIAIYLRSAGYAVAVTYHHNADTAAEFRK------NTSIPVFCWDV 56 Query: 67 GSADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGVMLAGQH 126 +E D G D+LVNNAG+ R W+ +N N+ V ++ Sbjct: 57 SDYAQCQEGIRQVELDVGPIDILVNNAGITRDAVLHHMTPGQWIEVINTNLGSVFNMSRN 116 Query: 127 AARLMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNSVA 186 M ++ +GRI+NISS++G R G+ Y +KA + T+ +A+E A+ ITVN++A Sbjct: 117 VIEGMRERNFGRIINISSVNGERGQIGQANYAAAKAGIFGFTKSLALESARKNITVNAIA 176 Query: 187 PGPVETQMTQAMHSEQTRESYYRLVPMHRYGTTDEIASAVCYLAADESSYITGHVLPVDG 246 PG +T M A+ ++ E +P+ GT +IA V +LA + S +ITG V+G Sbjct: 177 PGYCDTDMVSAI-PQEVLEKIVTGIPVGHLGTGSDIARLVVFLADNASGFITGATFDVNG 235 Query: 247 G-FMA 250 G FMA Sbjct: 236 GQFMA 240 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 104 bits (259), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 74/256 (28%), Positives = 127/256 (49%), Gaps = 15/256 (5%) Query: 9 RVALVTGGAMGIGASISQQLAARG-HTVL--VADINLEAAASTAQALVAAGHRAAPVQMD 65 + AL+TG GIG I++ LA +G H VL D N E AA A G ++ D Sbjct: 9 KTALITGSTSGIGLGIARALAQQGAHIVLNGFGDAN-EIAALQAGLTQDYGVQSTYHPAD 67 Query: 66 LGSADSIASAFADIEKDHGRCDVLVNNAGVARTYCFLDYPLENWLLTMNVNVTGVMLAGQ 125 + IA+ G D+LVNNAG+ D+P+E W + +N++ + Sbjct: 68 MSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSAFHTTR 127 Query: 126 HAARLMVKQRWGRIVNISSISGLRAGAGRTAYGTSKAAVIALTRQMAIELAQHGITVNSV 185 A M ++ WGRI+NI+S GL A ++AY +K ++ L++ A+E AQ G+T N++ Sbjct: 128 LALPAMKEKNWGRIINIASAHGLVGSAQKSAYVAAKHGIVGLSKVTALENAQTGVTCNAI 187 Query: 186 APGPVETQMTQ------AMHSEQTRESYYRLV-----PMHRYGTTDEIASAVCYLAADES 234 PG V T + Q A + + + + + + P + T +++ + +L ++ + Sbjct: 188 CPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGALAVFLCSEAA 247 Query: 235 SYITGHVLPVDGGFMA 250 + + G +DGG+ A Sbjct: 248 NQVRGAAWSMDGGWTA 263 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.130 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 435,328 Number of extensions: 14937 Number of successful extensions: 93 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 70 Number of HSP's successfully gapped: 13 Length of query: 256 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 176 Effective length of database: 736,747 Effective search space: 129667472 Effective search space used: 129667472 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)