BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3721.p (266 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 101 4e-23 gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 87 8e-19 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 87 1e-18 gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herm... 84 1e-17 gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protei... 81 5e-17 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 101 bits (252), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 19 GEGWGNGKAAAVLYARQGGRVLAVDRSIQAALETQDIIRREGGICEVLAVDVSRSDEVKA 78 G G G+A A A+QG +V+ S A + + G + + +DV+ + A Sbjct: 15 GASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESG---KGVVLDVNDAARSVA 71 Query: 79 MAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNRLVAVNQTSLFLTHKHVLPIMERQ 138 + + FG V +L NN GI + A+ +E+W+ ++A N TS+ + VL M + Sbjct: 72 LIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLSRAVLRGMMKA 131 Query: 139 RKGAIVNISSVAALRWIGFPYLGYSATKAAILAFTKNVAMQYAAMGIRANCVLPGMMNTP 198 + G I+NI+SV + Y+A KA + ++ +A + + I NCV PG ++T Sbjct: 132 KHGRIINITSVVGSTG-NAGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAPGFIDTD 190 Query: 199 MIREPLKAAYGGDIEQMCAQRDAQCPMGFMGDAWDVAHASLFLASDHARYITGLDMIVDG 258 M + EQ + Q P+G +G D+A A FLAS A YITG + V+G Sbjct: 191 MTKTLS--------EQQISALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVNG 242 Query: 259 GL 260 G+ Sbjct: 243 GM 244 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 87.0 bits (214), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 22/271 (8%) Query: 2 DKLMQDRAIIVTGAGSVGEGWGNGKAAAVLYARQGGRVLAV---DRSIQAALE---TQDI 55 + +Q + ++TG+ S G G G A A+ A+QG ++ D + AAL+ TQD Sbjct: 3 NTTLQGKTALITGSTS---GIGLGIARAL--AQQGAHIVLNGFGDANEIAALQAGLTQDY 57 Query: 56 IRREGGICEVLAVDVSRSDEVKAMAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNR 115 G D+SR E+ AM + A FG VD+L NN GI + + E W+ Sbjct: 58 ----GVQSTYHPADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDA 113 Query: 116 LVAVNQTSLFLTHKHVLPIMERQRKGAIVNISSVAALRWIGFPYL-GYSATKAAILAFTK 174 ++A+N +S F T + LP M+ + G I+NI+S L +G Y A K I+ +K Sbjct: 114 IIAINLSSAFHTTRLALPAMKEKNWGRIINIASAHGL--VGSAQKSAYVAAKHGIVGLSK 171 Query: 175 NVAMQYAAMGIRANCVLPGMMNTPMIREPLKA-AYGGDIEQMCAQRD---AQCPMGFMGD 230 A++ A G+ N + PG + TP++++ + A D+ A++ + P G Sbjct: 172 VTALENAQTGVTCNAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVT 231 Query: 231 AWDVAHASLFLASDHARYITGLDMIVDGGLS 261 + ++FL S+ A + G +DGG + Sbjct: 232 PEQLGALAVFLCSEAANQVRGAAWSMDGGWT 262 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 86.7 bits (213), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 8/191 (4%) Query: 69 DVSRSDEVKAMAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNRLVAVNQTSLFLTH 128 DVS D + G +DVL NN GI + + DW+ ++ N S+F Sbjct: 60 DVSDYDSAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMT 119 Query: 129 KHVLPIMERQRKGAIVNISSVAALRWIGFPYLGYSATKAAILAFTKNVAMQYAAMGIRAN 188 K V M + G I+NISSV A + F YSA KA + FTK +A++ A + N Sbjct: 120 KPVCDGMVERGWGRIINISSVNAQKG-AFGQTNYSAAKAGMHGFTKALALEVARKAVTVN 178 Query: 189 CVLPGMMNTPMIREPLKAAYGGDIEQMCAQRDAQCPMGFMGDAWDVAHASLFLASDHARY 248 + PG + T M+ A D+ + + Q PMG +G +VA +LASD A + Sbjct: 179 TISPGYIGTKMV-----TAIPQDV--LDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAF 231 Query: 249 ITGLDMIVDGG 259 +TG ++ ++GG Sbjct: 232 VTGANIAINGG 242 >gi|134095014|ref|YP_001100089.1| short chain dehydrogenase [Herminiimonas arsenicoxydans] Length = 228 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 115/233 (49%), Gaps = 16/233 (6%) Query: 36 GGRVLAVDRSIQAALETQDIIRREGGICEVLAVDVSRSDEVKAMAEAAMDYFGRVDVLHN 95 G +V+ R + E + I EGG V+ +DV+ +K+ A G +D+L N Sbjct: 3 GAQVVLAARRVDRLKELRAEIEAEGGAAHVVTLDVTDYASIKSAIAHAETEAGAIDILVN 62 Query: 96 NVGIAELGGAVETSEEDWNRLVAVNQTSLFLTHKHVLPIMERQRKG------AIVNISSV 149 N G+A G ++ + E++ ++ NQ F + V M + KG I+NI+SV Sbjct: 63 NAGVAARGRLLDVTPEEYAYVMDTNQRGAFFVAQEVAKRMIARAKGDAKKQHRIINIASV 122 Query: 150 AALRWIGFPYLG-YSATKAAILAFTKNVAMQYAAMGIRANCVLPGMMNTPMIREPLKAAY 208 A LR + P LG YS +KAA++ TK +A+++ GI N + PG + T + +E K+ Sbjct: 123 AGLRVM--PELGAYSMSKAALVHMTKTMAVEWGKFGINVNAICPGYIGTELNQEYFKS-- 178 Query: 209 GGDIEQMCAQRDAQCPMGFMGDAWDVAHASLFLASDHARYITGLDMIVDGGLS 261 EQ DA P +G D+ L LA++ + +I G M D G+S Sbjct: 179 ----EQGKLLLDA-LPRKRIGKPEDLDGLLLLLAAEESHFINGAIMTADDGMS 226 >gi|134096030|ref|YP_001101105.1| 3-ketoacyl-(acyl-carrier-protein) reductase [Herminiimonas arsenicoxydans] Length = 239 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 14/203 (6%) Query: 59 EGGICEVLAVDVSRSDEVKAMAEAAMDYFGRVDVLHNNVGIAELGGAVETSEEDWNRLVA 118 +GG EV D++ ++ K E ++ G V VL NN GI + W+ ++ Sbjct: 49 DGGSAEVAVFDITDAEATKVALETLLEA-GPVQVLVNNAGIHSDAVFPGMTSAQWHSVID 107 Query: 119 VNQTSLF-LTHKHVLPIMERQRKGAIVNISSVAALRWIGFPYLGYSATKAAILAFTKNVA 177 V+ F +T +P M R R G I+N+SS+AA+ + YSA K A+ + TK++A Sbjct: 108 VSLHGFFNVTQPLTMP-MIRTRWGRIINVSSIAAVTG-NRGQVNYSAAKGALHSATKSLA 165 Query: 178 MQYAAMGIRANCVLPGMMNTPMIREPLKAAYGGDIEQMCAQRDAQCPMGFMGDAWDVAHA 237 ++ A+ GI N V PG++ T MI E +I PM G +VA Sbjct: 166 LELASRGITVNAVAPGIIATGMIEEAFDDKAIQNI----------VPMKRAGKPEEVADL 215 Query: 238 SLFLASDHARYITGLDMIVDGGL 260 FLAS +A YI+G + ++GG+ Sbjct: 216 IGFLASPNAAYISGQIISINGGM 238 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 508,605 Number of extensions: 20177 Number of successful extensions: 89 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 74 Number of HSP's successfully gapped: 10 Length of query: 266 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 186 Effective length of database: 736,747 Effective search space: 137034942 Effective search space used: 137034942 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)