BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3719.p (411 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094186|ref|YP_001099261.1| two-component system response r... 201 5e-53 gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regu... 198 4e-52 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 189 3e-49 gi|134096418|ref|YP_001101493.1| propionate catabolism transcrip... 181 6e-47 gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent tra... 181 8e-47 >gi|134094186|ref|YP_001099261.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 473 Score = 201 bits (511), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 111/246 (45%), Positives = 156/246 (63%), Gaps = 7/246 (2%) Query: 81 MQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCASIPESLAE 140 MQ + RL + + VLI G++G+GKE ++RALH +S R +IA+N A+IP+ L E Sbjct: 106 MQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSPRASQPFIALNTAAIPKDLLE 165 Query: 141 SELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVTPLG 200 SELFG+ +GAF+GA +G+ +QADGGTLFLDEIGDMP LQTRLLRVLS+ +G Sbjct: 166 SELFGHERGAFTGA-QASRRGRFEQADGGTLFLDEIGDMPFDLQTRLLRVLSDGHFYRVG 224 Query: 201 ALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERAD----LGRLV 256 +P+ +V++I ATHQ+L + +G FREDLY+R+ LRLP+LRER + L R Sbjct: 225 GHQPLKANVRVIAATHQNLEQRVREGLFREDLYHRLNVIRLRLPSLRERREDIPILTRHF 284 Query: 257 LQMMADELGVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSDLPE 316 L A +LGV+ + ++ A Q L PGN+RQ+ + + + G +E DLP Sbjct: 285 LAQSAKQLGVEV--KRMSDGAMQFLTNLELPGNVRQLENLCNWITVMAPGQTVEAKDLPH 342 Query: 317 ELMQSQ 322 EL + Q Sbjct: 343 ELTEGQ 348 >gi|134095935|ref|YP_001101010.1| type 4 fimbriae expression regulatory protein [Herminiimonas arsenicoxydans] Length = 475 Score = 198 bits (503), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 188/333 (56%), Gaps = 16/333 (4%) Query: 73 QLAGGDALMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCA 132 +L G MQAL + RL PV I G++G+GKE +R +H SAR ++AVNC Sbjct: 141 RLMGQSDAMQALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARNDKPFVAVNCG 200 Query: 133 SIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLS 192 +IPE+L E+E FGY KGAF+GA G Q A+GGTL LDE+ D+PLA+Q +LLR + Sbjct: 201 AIPEALMEAEFFGYRKGAFTGA-ADDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQ 259 Query: 193 EREVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADL 252 ER V +GA PVDV++I ATHQ+L + + +G FR+DLYYR+ L LP LRER D Sbjct: 260 ERCVRKVGATVEEPVDVRIISATHQNLHDCVGKGTFRQDLYYRLNVIELHLPPLRERLDD 319 Query: 253 GRLVLQMMADELGVQADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVS 312 L+ Q + LG ++ ++PAA L +Y +PGN+R++ ++ + A N IEV+ Sbjct: 320 IGLLAQAILVRLG-GGEQAALSPAALAALCSYSFPGNVRELENILERALAFANDGLIEVA 378 Query: 313 DLPEELMQSQGPVLAQV-----HPLAPRMAERPPSAVVTGGPWPD---------ERTRVI 358 DL + S P A P++ + + +V P+ ER + Sbjct: 379 DLALKASPSLNPAPASTPSAVSQPISSEVEAEALATLVASSDIPESLPDHLDEVEREIIR 438 Query: 359 AALNGSRWNISAASRQLGMCRASLYRKLRQLDI 391 AL +R+N + A+ LG+ L ++++LDI Sbjct: 439 RALAKTRFNRTQAAELLGISFRQLRYRMQRLDI 471 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 189 bits (479), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 114/322 (35%), Positives = 182/322 (56%), Gaps = 36/322 (11%) Query: 71 IDQLAGGDALMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVN 130 +D L G +Q + E KRL VLI G++GTGKE +RA+H S+R ++ VN Sbjct: 176 VDGLVGNSTALQPVRETIKRLATVSSTVLITGESGTGKEIAARAMHYLSSRSGNHFVPVN 235 Query: 131 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 190 C ++ + ESELFG+ KGAFSGA +G A GGTLFLDE+ ++P+A+Q +LLRV Sbjct: 236 CGAVAPDIIESELFGHVKGAFSGA-ASSREGLFFYAQGGTLFLDEVAELPMAMQVKLLRV 294 Query: 191 LSEREVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERA 250 L E+++ P+GA R +PVDV++I AT++++ + +GRFR+DLYYR+ + +P LRERA Sbjct: 295 LEEKKIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYRLNVVQVHMPPLRERA 354 Query: 251 D----LGRLVLQMMADELGV---QADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAV 303 D L ++ +A +LGV Q D L+A ++++ WPGN+R++ +I + Sbjct: 355 DDIPALAAYFVRQLAPQLGVPPQQPDNALLAA-----MVSHAWPGNVRELRNLIERWLIL 409 Query: 304 MNGTRIEVSDLPEELMQSQGPVLAQVHPLAPRMAERPPSAVVTGGPWPDERTRVIAALNG 363 N +PE + S+ + ++ + E+ ++ L Sbjct: 410 GN--------IPEIAIGSKSVAIDNGSDVSLQAI---------------EKQHILKILGA 446 Query: 364 SRWNISAASRQLGMCRASLYRK 385 + N + A+R+LG+ R +L RK Sbjct: 447 ADGNKTEAARRLGLSRKTLERK 468 >gi|134096418|ref|YP_001101493.1| propionate catabolism transcriptional activator [Herminiimonas arsenicoxydans] Length = 550 Score = 181 bits (459), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 124/332 (37%), Positives = 179/332 (53%), Gaps = 27/332 (8%) Query: 71 IDQLAGGDALMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHD----YSARRQAG- 125 I + G A+M+++ + + VLI G+TGTGKE +++A+H + QAG Sbjct: 221 IKDVRGESAVMESVRQSITLFAKSPATVLIQGETGTGKELVAQAIHRAHPLIQGKTQAGH 280 Query: 126 -WIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQ 184 ++AVNC ++ ESL ESELFGY +GAF+G+ GG G + A GTLFLDEIG+MPL+LQ Sbjct: 281 PFVAVNCGALAESLLESELFGYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGEMPLSLQ 340 Query: 185 TRLLRVLSEREVTPLGALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLP 244 TRLLRVL EREV +G RP+PV V++I ATH DL + +GRFR DL+YR++ L LP Sbjct: 341 TRLLRVLEEREVVRVGGTRPIPVSVRIISATHCDLDARVREGRFRADLFYRLSVLRLSLP 400 Query: 245 ALRERAD----LGRLVLQMMADELGVQADEQLIA--PAAWQRLLAYPWPGNLRQMHAVIR 298 LR+R + L L+ L V+ L A L +Y WPGN+R++ + Sbjct: 401 PLRQRPEDVPALTEWYLKSALASLDVRPHANLHAEISTCMPLLASYAWPGNVRELRNL-- 458 Query: 299 YSCAVMNGTRIEVSDLPEELMQSQGPVLAQVHPLAPRMAERPPSAVVTGGP--WPDERTR 356 +E L Q A + +AP ++ A+ E+T Sbjct: 459 ----------MERLALFLAAAPLQALTPAFLKNIAPELSASVSDAIAVASQDVLAQEQTE 508 Query: 357 VI-AALNGSRWNISAASRQLGMCRASLYRKLR 387 + L N AA+ LG+ R +L+R+L+ Sbjct: 509 TLQQVLQRHHGNREAAANYLGISRTTLWRRLQ 540 >gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent transcriptional regulator [Herminiimonas arsenicoxydans] Length = 550 Score = 181 bits (458), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 146/240 (60%), Gaps = 1/240 (0%) Query: 80 LMQALVERGKRLIERGIPVLILGQTGTGKEYLSRALHDYSARRQAGWIAVNCASIPESLA 139 +MQ + +++ + G VLI G++G GKE L+R +H S + ++ +NC +IP L Sbjct: 254 IMQQITVLAQKVAKVGATVLITGESGVGKEVLTRLIHKESTHDKGPFVKINCGAIPRDLL 313 Query: 140 ESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVTPL 199 ESELFGY GAF+GA G G ++ AD GTLFLDEIG++PL LQ +LL+VL +R +T L Sbjct: 314 ESELFGYEGGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRL 373 Query: 200 GALRPVPVDVQLICATHQDLPNLIAQGRFREDLYYRIAGGVLRLPALRERADLGRLVLQM 259 G+ RP+ VDV+++ AT++DL ++ +FR DL+YR+ L +P LRER + ++Q Sbjct: 374 GSTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQH 433 Query: 260 MADELGVQ-ADEQLIAPAAWQRLLAYPWPGNLRQMHAVIRYSCAVMNGTRIEVSDLPEEL 318 DEL Q ++ ++ + LL Y WPGN+R++ ++ + I LP L Sbjct: 434 FLDELNAQYGFDKRLSEQSLAALLDYDWPGNIRELRNMVERLVVTAPESLIRSDSLPTPL 493 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 836,109 Number of extensions: 36072 Number of successful extensions: 138 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 121 Number of HSP's successfully gapped: 8 Length of query: 411 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 327 Effective length of database: 723,567 Effective search space: 236606409 Effective search space used: 236606409 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)