BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3718.p (761 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 778 0.0 gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 385 e-108 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 373 e-104 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 361 e-101 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 360 e-100 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/597 (62%), Positives = 471/597 (78%), Gaps = 1/597 (0%) Query: 162 FAAILDLGYFLKAYQEVSVDGSSRIEIINAAGLQLAELYGGILSGGSDYAGQEYATFLLT 221 AAI+DLGYFL+ Y++V++ RIE++ G QLAEL G +LSGG D++ E+ L Sbjct: 1 MAAIIDLGYFLQLYKDVNLGDDGRIEVLAHDGYQLAELNGAMLSGGIDFSASEFGKSL-E 59 Query: 222 GKGDGLIHALRPGDPVQHVGVQRRLAHYPLAVVVSRDQQALLSKLWPAHRVYYLQAILIS 281 DG+I RPG P++ +GV RR+ +YPL VVV+ DQ L+S+L H+ Y +AI +S Sbjct: 60 HAADGVIDVKRPGMPLEDIGVLRRVRNYPLLVVVTHDQNYLMSRLVDRHQGYLWRAIAVS 119 Query: 282 LLIVVLSGGLISLAHRRRYLYEKLVYSEREKSGLIHQLEQEKSRAYQLASHDYLTGIPNR 341 + +V L GL+ +A R+R LY L SE+EK LI QLEQEKSRA ASHDYLTG+PNR Sbjct: 120 IAVVFLLCGLLMIASRQRRLYNVLTASEQEKLNLISQLEQEKSRALLQASHDYLTGVPNR 179 Query: 342 MLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQEVARRLRAAVRE 401 LFYE+AATEL+RA+RSR LYALFFLDLDKFKLINDTLGHAVGD LLQ VARRLR ++RE Sbjct: 180 RLFYEMAATELARAKRSRKLYALFFLDLDKFKLINDTLGHAVGDLLLQGVARRLRESLRE 239 Query: 402 YDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYPDLLGCDVETSPSIGIALYP 461 YDL+ARLGGDEFV+LVSE+ E +A +A KLV+ +R P+ DL G D++ SPSIGIALYP Sbjct: 240 YDLLARLGGDEFVILVSEMASESDIARVAAKLVDVVRDPFLDLGGNDIDVSPSIGIALYP 299 Query: 462 RDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNAIAVRGLELLGRFRQAIKDDEFCL 521 RDGQ +E L+ +AD AMY+AKSAGA YRF+D SLNA + R ELL RF++AIKDDEFCL Sbjct: 300 RDGQDVETLLMHADLAMYSAKSAGAATYRFFDTSLNASSARETELLSRFKRAIKDDEFCL 359 Query: 522 HYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPLGPWIIEAVCRQL 581 HYQP+VELQ++ V+G+EALIRW HPEHGLIYP +FI LAE +DL+ PLG W+++A CRQL Sbjct: 360 HYQPRVELQNFSVLGLEALIRWNHPEHGLIYPNDFISLAENNDLIVPLGNWVVDAACRQL 419 Query: 582 AQWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIEVTESCFISDLEQ 641 A WR +GLP+VPVAINVS++QL D+ L+ TV L +Y ++ ++LEIEVTESCFI D + Sbjct: 420 AVWRGQGLPIVPVAINVSSRQLKDDTLLETVMTTLAKYQIAPEMLEIEVTESCFIEDFDA 479 Query: 642 ARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDIRNDNSDGMIVAS 701 A Q LE+L+ G++I LDDYGTG+S L ++K LP+YA+KIDRSF+RDIRNDNSD +IVAS Sbjct: 480 ASQVLEQLQKNGIKIALDDYGTGFSGLKNLKILPIYAIKIDRSFIRDIRNDNSDAVIVAS 539 Query: 702 TVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPVAPAQLVPLLQKGRF 758 T++LA NLGL+VVAEGVE++EQL+HLK GCD+VQGFY QRPVA ++ LLQ+GRF Sbjct: 540 TISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFQRPVAATEIDTLLQRGRF 596 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 385 bits (989), Expect = e-108, Method: Compositional matrix adjust. Identities = 203/474 (42%), Positives = 293/474 (61%), Gaps = 11/474 (2%) Query: 280 ISLLIVVLSGGLISLAHRRRYLYEKLVYSEREKSGLIHQLEQEKSRAYQLASHDYLTGIP 339 ++L++++++ ++++A L +L E + S L L + A D LT +P Sbjct: 220 LALVVIIVTLSVLAIALLTSVLDTRL---ESQTSLLAKSLAVANQELTRQALQDNLTKLP 276 Query: 340 NRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQEVARRLRAAV 399 NR L + L +A R+ +AL F+DLD FK IND+LGH +GD LL EVA+R+R ++ Sbjct: 277 NRTLLEDRLNQILHKAERTHTRFALMFIDLDGFKAINDSLGHHIGDMLLIEVAQRIRGSI 336 Query: 400 REYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYPDLLGCDVET---SPSIG 456 R D ARLGGDEFV+L+ E+ + E A +ADKL + P+ D T S S+G Sbjct: 337 RAQDTAARLGGDEFVLLI-EVTEPEDAASVADKLCNIINQPFE----IDFHTLGVSASVG 391 Query: 457 IALYPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNAIAVRGLELLGRFRQAIKD 516 I +YP DG + L+ NAD+AMY KS G Y F++AS+NA A L+++ R A++ Sbjct: 392 ITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGYHFFEASMNANAHNQLQVIQDLRLALER 451 Query: 517 DEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPLGPWIIEA 576 EF LHYQPK + VVG EAL+RWQHP G+I P +FI LAE L+ P+G W+++ Sbjct: 452 KEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRGMIAPDDFIALAEKTGLIVPIGEWVLDE 511 Query: 577 VCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIEVTESCFI 636 CRQ+ W DEG VA+N+SA Q +++ LI V L R + A L +EVTES + Sbjct: 512 ACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLIELVQTTLARNNFPASGLILEVTESTAM 571 Query: 637 SDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDIRNDNSDG 696 D+E + L+KL G+ I +DD+GTGYSSL ++K LP LKIDR F+RD+ ++D Sbjct: 572 HDVEASLTILDKLAGLGIDISIDDFGTGYSSLLYLKRLPATELKIDRGFIRDLAQGSNDS 631 Query: 697 MIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPVAPAQLV 750 IVA+ + L R+L L +VAEGVET EQ +L+++GCD +QG+ + RP+AP Q + Sbjct: 632 SIVAAIIALGRSLNLHIVAEGVETEEQQAYLRVLGCDAMQGYLMGRPMAPDQFM 685 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 373 bits (957), Expect = e-104, Method: Compositional matrix adjust. Identities = 187/427 (43%), Positives = 282/427 (66%), Gaps = 1/427 (0%) Query: 331 SHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQE 390 + D LTG+ NR L + +S A R + + F+DLD+FK +NDTLGH GD LL+ Sbjct: 510 NRDALTGLANRSLMRDRLGQAVSYAHRYGHPIWILFVDLDRFKFVNDTLGHQAGDILLKA 569 Query: 391 VARRLRAAVREYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYPDLLGCDVE 450 V+ RL+AAVR+ D VAR+GGDEFV+++ E D I +++E++ P + G + Sbjct: 570 VSARLQAAVRDTDTVARMGGDEFVLILPERTDAGLSTGIMQRIMESIAQPL-TIEGHEFF 628 Query: 451 TSPSIGIALYPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNAIAVRGLELLGRF 510 S SIG+A+YP DG++ E L+ +AD AMY AK G ++FY ++N A+ L + G Sbjct: 629 ISGSIGVAVYPADGETPEELIKHADIAMYRAKETGRNNFQFYTPAMNERALERLHIEGDL 688 Query: 511 RQAIKDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPLG 570 R A++ +EF LHYQP+V+L+ ++VG+EALIRWQHPE G++ P FIGLAE + L+ P+G Sbjct: 689 RNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENGLIVPIG 748 Query: 571 PWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIEV 630 W+I C Q W++ G + +++N+SA+Q E L+ ++ +LR +L+ + LEIE+ Sbjct: 749 AWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLAPEYLEIEL 808 Query: 631 TESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDIR 690 TES ++D+++A L +L+ G+++ +DD+GTGYSSLS++K P+ LKIDRSFV DI Sbjct: 809 TESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDIT 868 Query: 691 NDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPVAPAQLV 750 D D IVAS ++LA +L L V+AEGVET EQL +L+ CD++QG++ RPV Sbjct: 869 IDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPVTAEAFS 928 Query: 751 PLLQKGR 757 +L+ G+ Sbjct: 929 VMLKDGK 935 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 186/426 (43%), Positives = 263/426 (61%), Gaps = 2/426 (0%) Query: 330 ASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLINDTLGHAVGDALLQ 389 A+HD LTG+PNR L Y+ + + R NL A+ FLDLD+FK IND+LGH VGD LL+ Sbjct: 287 ATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKFINDSLGHQVGDELLK 346 Query: 390 EVARRLRAAVREYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVETLRAPYPDLLGCDV 449 A+RL + +RE D VAR GGDEFV+L++ EE++ +++ + P+ G + Sbjct: 347 ITAQRLTSCLRESDTVARQGGDEFVLLLTSQPSEESITHTMQRVLHEVAQPWM-ANGLEF 405 Query: 450 ETSPSIGIALYPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDASLNAIAVRGLELLGR 509 + S+G+ L P DG+ E L+ NADSAMY AK G ++++ +N A L LL R Sbjct: 406 RITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATEMNDTATDRLALLNR 465 Query: 510 FRQAIKDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGEFIGLAETHDLVQPL 569 RQAI + EF LHYQPK+ L + ++G EALIRW E G++ PG FI LAE L+ P+ Sbjct: 466 LRQAIPNHEFVLHYQPKINLANGDIIGAEALIRWNSAE-GMVSPGSFIPLAEETGLIIPI 524 Query: 570 GPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDALRRYHLSADLLEIE 629 G W++E CRQ W+ G + +++N+S++QL ++ V L L A LE+E Sbjct: 525 GVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQVLAETGLEAQYLELE 584 Query: 630 VTESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLPVYALKIDRSFVRDI 689 +TES SD+E++ L +LR G++I LDD+GTGYSSLS++K PV LKID+SFVRD+ Sbjct: 585 ITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDL 644 Query: 690 RNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEVQGFYLQRPVAPAQL 749 IV + ++L NL L V+AEG+ET EQ L C+E QG+ + RPV+ Sbjct: 645 ATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQGYLMSRPVSHQHF 704 Query: 750 VPLLQK 755 LLQ+ Sbjct: 705 ELLLQR 710 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 360 bits (923), Expect = e-100, Method: Compositional matrix adjust. Identities = 183/442 (41%), Positives = 276/442 (62%), Gaps = 1/442 (0%) Query: 316 IHQLEQEKSRAYQLASHDYLTGIPNRMLFYELAATELSRARRSRNLYALFFLDLDKFKLI 375 + Q+++ + A++D LTG+ NR L E L +ARR + +L F+DLD FKL+ Sbjct: 375 VTQIKRYQEDLEHQANYDTLTGLANRNLLNERTQQALLQARRHDHFLSLVFIDLDNFKLV 434 Query: 376 NDTLGHAVGDALLQEVARRLRAAVREYDLVARLGGDEFVVLVSEIRDEETVAEIADKLVE 435 ND++GH GD L+ V RL+ VR+ D VAR+GGDEFV+L++ ++ A + ++ Sbjct: 435 NDSMGHGAGDELIANVGSRLQTCVRDGDTVARIGGDEFVLLLTNQSVSDSNAGVMQRIQA 494 Query: 436 TLRAPYPDLLGCDVETSPSIGIALYPRDGQSIEALMTNADSAMYTAKSAGAGLYRFYDAS 495 L P + G ++ + S+G+A +P DG+ E+L+ NAD+AMY AKS+G ++FY Sbjct: 495 ELIKPMW-IRGQEIVVTCSMGVARFPEDGEDSESLLANADTAMYRAKSSGRNNFQFYTKE 553 Query: 496 LNAIAVRGLELLGRFRQAIKDDEFCLHYQPKVELQDYRVVGMEALIRWQHPEHGLIYPGE 555 +NA + L L A+K+DE L YQP+++L+D V+GMEALIRWQHP+ GLI P + Sbjct: 554 MNATSGERLSLESDLWHALKNDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMD 613 Query: 556 FIGLAETHDLVQPLGPWIIEAVCRQLAQWRDEGLPLVPVAINVSAKQLNDERLIATVHDA 615 FI +AE + L+ P+G W++E CR Q + EGLP + VAIN+SA+QL+D + +V Sbjct: 614 FIPMAECNGLIIPIGIWVLETACRHNLQLQKEGLPPIRVAINLSARQLSDRNFVESVQSV 673 Query: 616 LRRYHLSADLLEIEVTESCFISDLEQARQTLEKLRDEGLRIYLDDYGTGYSSLSHIKTLP 675 + L LE+EVTES + ++E TL L G+++ LDD+GTG+SSL+++K P Sbjct: 674 IEAIGLDPHYLELEVTESMVMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFP 733 Query: 676 VYALKIDRSFVRDIRNDNSDGMIVASTVTLARNLGLKVVAEGVETREQLMHLKLMGCDEV 735 + LKID+SF+ + +D D +I + + LA L +KV+AEGVE E L LK GCDE Sbjct: 734 IDRLKIDQSFIFNCDSDPGDAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEG 793 Query: 736 QGFYLQRPVAPAQLVPLLQKGR 757 QG+++ RP+ L L G+ Sbjct: 794 QGYFISRPLTFDDLRMFLLTGK 815 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,335,081 Number of extensions: 55107 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 204 Number of HSP's successfully gapped: 34 Length of query: 761 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 672 Effective length of database: 707,092 Effective search space: 475165824 Effective search space used: 475165824 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)