BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3717.p (298 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093905|ref|YP_001098980.1| phosphonate ABC transporter per... 268 2e-73 gi|134096366|ref|YP_001101441.1| phosphite transport system bind... 120 6e-29 gi|134094068|ref|YP_001099143.1| phosphonate ABC transporter per... 86 3e-18 >gi|134093905|ref|YP_001098980.1| phosphonate ABC transporter periplasmic substrate-binding protein [Herminiimonas arsenicoxydans] Length = 292 Score = 268 bits (685), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 124/267 (46%), Positives = 186/267 (69%), Gaps = 3/267 (1%) Query: 32 CERPQRLRFSFVPQGRGNDQQTALNPLIEELRERLKMPVDVVVPTSYGSVVEGLIAGAVD 91 CE+P RLRFSFVPQ + AL PL +EL+ + MPVDVV P+SYG+V+EGL+AG VD Sbjct: 29 CEKPGRLRFSFVPQNDVQTEVDALQPLFDELQLAIGMPVDVVAPSSYGAVIEGLLAGTVD 88 Query: 92 VARLGPASYVTARKGDPQITPFASMQQVEPNFAAQGGVSSVYYALLITRQQGPYDSVASL 151 +ARLGPA+Y++A+K DP I FA++ + + + + Y+++LI R Y ++ SL Sbjct: 89 LARLGPAAYISAKKQDPGIIAFATVARKTSD---RSTGDTFYHSILIVRNDSTYQTIESL 145 Query: 152 KGKVLVLADPESTSGSLIPRHIFARQYKLQLDQYFSRIGYSGNHEQSVMAVLQRHADAAF 211 +GK + L DP+STSG+LIPRH+F+++ L L++YFS++ YSG H+QS++ + + DAAF Sbjct: 146 RGKKVALVDPDSTSGALIPRHVFSKKTGLPLEKYFSQVVYSGAHDQSLLNLSKNRVDAAF 205 Query: 212 VASTNLSRMISDGKLKKSDLRVLWRSAPIPFDPFVYRGQLCADIRHTIRAVFLDKNALRV 271 ++ST+L+ + G++K+ + R LW S PIP +PFV R QLC+D++ I AVFL++ Sbjct: 206 ISSTSLTIPVESGQIKRDEFRTLWTSKPIPRNPFVLRNQLCSDLKRKIIAVFLERGGNAN 265 Query: 272 RLTLDNLRATHFVPVRDADYQIIRALP 298 + + +L FVP+ D DYQI+R LP Sbjct: 266 KNVMQSLNVMRFVPISDQDYQILRNLP 292 >gi|134096366|ref|YP_001101441.1| phosphite transport system binding protein PtxB [Herminiimonas arsenicoxydans] Length = 286 Score = 120 bits (302), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 88/297 (29%), Positives = 140/297 (47%), Gaps = 22/297 (7%) Query: 1 MKRLLKTVLLGAAVALSASTTAPALAGGKSACERPQRLRFSFVPQGRGNDQQTALNPLIE 60 MK + +LL A LS + TA + P+ L+ + +P + PL Sbjct: 1 MKSIFTALLLSAITLLSGAATA-------APNPDPETLKVALLPDENASTVIKNNKPLEL 53 Query: 61 ELRERLKMPVDVVVPTSYGSVVEGLIAGAVDVARLGPASYVTARKGDPQITPFASMQQVE 120 L + L ++++V T Y S++E + G +D+A GP SYV AR+ +I PFA+++Q Sbjct: 54 YLEKALGKKIELIVTTDYSSMIEAMRHGRIDLAYFGPLSYVLARQKS-EIEPFAAIKQ-- 110 Query: 121 PNFAAQGGVSSVYYALLITRQQGPYDSVASLKGKVLVLADPESTSGSLIPRHIFARQYKL 180 +G S+ Y A+LI +S+A + K + D STS LIP+ + A L Sbjct: 111 -----KG--STTYQAVLIVNTGAGINSIADIANKDVAYGDKASTSSHLIPKSMLAEGGLL 163 Query: 181 QLDQYFSRIGYSGNHEQSVMAVLQRHADAAFVASTNLSRMISDGKLKKSDLRVLWRSAPI 240 QY R + G H+ +AV HA A ++ ++ G + + ++VL S P Sbjct: 164 AGTQY--REHFVGAHDAVALAVQNGHAQAGGLSKPIFEVLVQRGMIDPNKVKVLAESKPF 221 Query: 241 PFDPFVYRGQLCADIRHTIRAVFLDKNALRVRLTLDNLRATHFVPVRDADYQIIRAL 297 P P+ R L +++ IR VFL+ V L +A F P D DY ++R L Sbjct: 222 PQYPWTMRSNLKPELKAKIRTVFLEMKDPEV---LKPFKAEGFGPASDKDYDVVRNL 275 >gi|134094068|ref|YP_001099143.1| phosphonate ABC transporter periplasmic substrate-binding protein [Herminiimonas arsenicoxydans] Length = 289 Score = 85.5 bits (210), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 117/264 (44%), Gaps = 18/264 (6%) Query: 36 QRLRFSFVPQGRGNDQQTALNPLIEELRERLKMPVDVVVPTSYGSVVEGLIAGAVDVARL 95 Q LR S +P + Q PL L ++L M V+ T Y + VEGLI +D+ Sbjct: 30 QVLRVSAIPDEAPTELQRKFKPLGNYLEQKLGMKVEFTPVTDYAASVEGLINNKLDMVWF 89 Query: 96 GPASYVTAR-KGDPQITPFASMQQVEPNFAAQGGVSSVYYALLITRQQGPYDSVASLKGK 154 G ++V A + +I P ++ E + ++ IT + + LKGK Sbjct: 90 GGFTFVQANVRSGGKIIPLVQREEDEK-----------FKSVFITTDKS-ITKLGDLKGK 137 Query: 155 VLVLADPESTSGSLIPRHIFARQYKLQLDQYFSRIGYSGNHEQSVMAVLQRHADAAFVAS 214 STSG L+PR + K+ D R+ +SG H+ +V AV DA + Sbjct: 138 NFSFGSESSTSGHLMPRS-YLLAAKINPDTDMKRVAFSGAHDATVAAVSGGKVDAGVLNI 196 Query: 215 TNLSRMISDGKLKKSDLRVLWRSAPIPFD-PFVYRGQLCADIRHTIRAVF--LDKNALRV 271 + ++++ GK+ +RV + + P +D + R + +R + F LD N + Sbjct: 197 SVWEKLVAAGKVNPQQVRVFY-TTPGYYDYNWSVRSDMNPVVRKKLSDAFLALDANNPQD 255 Query: 272 RLTLDNLRATHFVPVRDADYQIIR 295 + L+ RAT F+P + +Y I Sbjct: 256 KEILELQRATRFIPTKAENYAAIE 279 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 504,791 Number of extensions: 19426 Number of successful extensions: 60 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 52 Number of HSP's successfully gapped: 4 Length of query: 298 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 217 Effective length of database: 733,452 Effective search space: 159159084 Effective search space used: 159159084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)