BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3716.p
         (165 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093568|ref|YP_001098643.1| peroxiredoxin HYR1 [Herminiimon...   254   2e-69
gi|134096085|ref|YP_001101160.1| glutathione peroxidase [Hermini...   145   1e-36

>gi|134093568|ref|YP_001098643.1| peroxiredoxin HYR1 [Herminiimonas
           arsenicoxydans]
          Length = 163

 Score =  254 bits (648), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 135/159 (84%)

Query: 3   TLYDFQPRLPDQTPFPLEQLRGKVLLIVNSASKCGFTPQYNGLEAIHRQFQARGLEVLAF 62
           T+YDF           L Q RGKVLLIVN+ASKCGFTPQY GLEA++RQF+ RG+EVL F
Sbjct: 5   TVYDFSSHSLSGAAVDLAQYRGKVLLIVNTASKCGFTPQYEGLEAVYRQFRERGVEVLGF 64

Query: 63  PCNQFGAQEPGNAEEIGAFCEKNYGVSFPLFAKIDVNGEHADPLFQYLKKEAPGLLGSKA 122
           PCNQFG QEPG+A  IG FCEKNYGV+FPLFAKIDVNG++ADPL+QYLK  APGLLGS+A
Sbjct: 65  PCNQFGGQEPGDAAAIGTFCEKNYGVTFPLFAKIDVNGDNADPLYQYLKHAAPGLLGSEA 124

Query: 123 IKWNFTKFLVRRDGSVFKRYAPQTRPEEMISDIETLLAE 161
           IKWNFTKFL+R++G+V+KRYAPQT+PEE+I DI TLLAE
Sbjct: 125 IKWNFTKFLIRKNGTVYKRYAPQTKPEELIEDINTLLAE 163


>gi|134096085|ref|YP_001101160.1| glutathione peroxidase
           [Herminiimonas arsenicoxydans]
          Length = 193

 Score =  145 bits (365), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/156 (47%), Positives = 101/156 (64%), Gaps = 7/156 (4%)

Query: 9   PRLPDQTPFPLEQLRGKVLLIVNSASKCGFTPQYNGLEAIHRQFQARGLEVLAFPCNQFG 68
           PRL D+ P  L Q  GKV+L+VN+AS CGFT QY GLE ++ ++Q +GL VL F  N FG
Sbjct: 43  PRLQDEAPQNLCQYAGKVVLVVNTASYCGFTVQYEGLEQLYAKYQPQGLVVLGFASNDFG 102

Query: 69  AQEPGNAEEIGAFCEKNYGVSFPLFAKIDVNGEHADPLFQYLKKEAPGLLGSKAIKWNFT 128
            QEPG  +EI  FC+  YGV FP+FAK  V G +++P++  L K      G+K  +WNF 
Sbjct: 103 QQEPGANKEIAEFCKNTYGVKFPMFAKSSVIGPNSNPVYLSLMKA-----GAKPPQWNFH 157

Query: 129 KFLVRRDGSVFKRYAPQTRPEE--MISDIETLLAEE 162
           K L+ RDG V   Y  + RP++  MI+D+E  LA++
Sbjct: 158 KILLGRDGKVIASYPSKIRPDDKKMIADLEQALAKK 193


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 325,130
Number of extensions: 12728
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 2
Length of query: 165
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 90
Effective length of database: 753,222
Effective search space: 67789980
Effective search space used: 67789980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)