BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3715.p (342 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093570|ref|YP_001098645.1| twitching mobility protein [Her... 416 e-118 gi|134093569|ref|YP_001098644.1| twitching motility protein PilU... 232 2e-62 gi|134094548|ref|YP_001099623.1| twitching motility protein PilU... 214 4e-57 gi|134095151|ref|YP_001100226.1| general secretion pathway prote... 116 2e-27 gi|134094005|ref|YP_001099080.1| putative secretion pathway ATPa... 97 2e-21 >gi|134093570|ref|YP_001098645.1| twitching mobility protein [Herminiimonas arsenicoxydans] Length = 347 Score = 416 bits (1069), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/341 (58%), Positives = 258/341 (75%) Query: 1 MDIATLLAFAVRNQASDLHLCAGLAPLLRVHGAIRRINLQPLEAAQLQQALHAVMPSALH 60 MDI+ LLAF+V+N+ASDLHL AGL P++RVHG +RRINL PLE + ++ +M Sbjct: 1 MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQR 60 Query: 61 RRHAAGADCDFSFALPTLGRFRVHAFHQQRGPAAAIRCLGQQPPSLSELAAPPLCAELAL 120 + + + DFSFA+P L RFRV+AF+Q RG AA +R + + SL +L AP + AEL+L Sbjct: 61 KVYEERLEIDFSFAIPGLARFRVNAFNQDRGAAAVLRTIPSKILSLEDLHAPKIFAELSL 120 Query: 121 RPRGLVLVSGPTGAGKSSTLAAMVRHINEMRPVHILTIEDPIEFIHEPRRALVTQREIGT 180 +PRGLVLV+GPTG+GKS+TLAAMV H+NE HILTIEDPIEF+H+ ++ L+ QRE+G Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHDSKKCLINQREVGP 180 Query: 181 HVADFAQALRAALREDPDVLLVGELRDADTIGLALTAAETGHLVLGTLHAASAAKTVDRI 240 H F ALR+ALREDPDV+LVGELRD +TI LAL+AAETGHLV GTLH +SAAKT+DRI Sbjct: 181 HTHSFENALRSALREDPDVVLVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDVFPAGEKEAARALLAEALEGVIAQTLLPTVDGLGRVAAHELLVATPAVRNLIREGRNA 300 IDVFP EKE RA+L+E+L+ VI+QTLL T DG GRVAAHE+++ TPA+RNLIRE + A Sbjct: 241 IDVFPGDEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMLGTPAIRNLIRESKIA 300 Query: 301 QLVSVMQAGGAQAMQTLEASLAALVRQGRISEQTARAQGAT 341 Q+ S +Q G MQTL+++L LV++ IS AR+ T Sbjct: 301 QMYSAIQTGSNVGMQTLDSNLTELVKRNVISNAAARSAAKT 341 >gi|134093569|ref|YP_001098644.1| twitching motility protein PilU [Herminiimonas arsenicoxydans] Length = 378 Score = 232 bits (592), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 118/330 (35%), Positives = 189/330 (57%) Query: 6 LLAFAVRNQASDLHLCAGLAPLLRVHGAIRRINLQPLEAAQLQQALHAVMPSALHRRHAA 65 LL + SDL + A P ++ G + +++ QPL A + A+M A Sbjct: 13 LLRLMLSKNGSDLFITADFPPAFKIDGKMTQVSNQPLNATHTIELARAIMSDKQAAEFEA 72 Query: 66 GADCDFSFALPTLGRFRVHAFHQQRGPAAAIRCLGQQPPSLSELAAPPLCAELALRPRGL 125 +C+F+ + +GRFRV AF QQ +R + P + +L P E+ + RGL Sbjct: 73 TKECNFAISPGGIGRFRVSAFIQQGRVGMVLRTITTAIPKIEDLGVPETLKEVVMTKRGL 132 Query: 126 VLVSGPTGAGKSSTLAAMVRHINEMRPVHILTIEDPIEFIHEPRRALVTQREIGTHVADF 185 V++ G TG+GKS+TLAAM+ + NE HI+TIEDP+E++H + ++TQREIG + Sbjct: 133 VIMVGATGSGKSTTLAAMLGYRNEHSHGHIITIEDPVEYVHPHKNCVITQREIGVDTESW 192 Query: 186 AQALRAALREDPDVLLVGELRDADTIGLALTAAETGHLVLGTLHAASAAKTVDRIIDVFP 245 AL+ LR+ PDV+ +GE+RD +T+ A+ AETGHL L T+HA S+ + +DRI++ FP Sbjct: 193 GIALKNTLRQAPDVIFIGEIRDRETMDYAIAFAETGHLCLATMHANSSNQALDRIVNFFP 252 Query: 246 AGEKEAARALLAEALEGVIAQTLLPTVDGLGRVAAHELLVATPAVRNLIREGRNAQLVSV 305 ++ L+ L+G+I+Q L+P D GR A E+++ +P + +LI +G ++ + Sbjct: 253 EERRQQLLMDLSLNLKGMISQRLIPLKDTKGRCVAVEVMLNSPLISDLIFKGDVHEIKEI 312 Query: 306 MQAGGAQAMQTLEASLAALVRQGRISEQTA 335 M+ MQT + +L L G+IS + A Sbjct: 313 MKKSRELGMQTFDQALFDLYEAGKISYEDA 342 >gi|134094548|ref|YP_001099623.1| twitching motility protein PilU PilT like [Herminiimonas arsenicoxydans] Length = 375 Score = 214 bits (546), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 197/325 (60%), Gaps = 5/325 (1%) Query: 15 ASDLHLCAGLAPLLRVHGAIRRINLQPLEAAQLQQALHAVMPSALHRRHAAGADCDFSFA 74 ASDL + ++++G + IN Q L+ + L ++ +A + D + + Sbjct: 15 ASDLFIAVNSPIHIKINGNLMPINQQKLDQKAIMSLLAEIVSAA--KLEELDRDNELNIG 72 Query: 75 LPT--LGRFRVHAFHQQRGPAAAIRCLGQQPPSLSELAAPPLCAELALRPRGLVLVSGPT 132 +P +G FR+ AF Q+ +A +R + + P+L+ LA PP+ A+L + RGL+LV G T Sbjct: 73 IPVAGVGSFRLSAFRQRGSISAVLRYIPGEIPALNSLALPPVLADLVMEKRGLLLVVGST 132 Query: 133 GAGKSSTLAAMVRHINEMRPVHILTIEDPIEFIHEPRRALVTQREIGTHVADFAQALRAA 192 G+GKS+T+A+M+ H N +R HILT+EDPIEF+ + +++++ QREIG+ D + ALR A Sbjct: 133 GSGKSTTIASMLDHRNGLRTGHILTLEDPIEFLFKNKKSVINQREIGSDSTDLSTALRNA 192 Query: 193 LREDPDVLLVGELRDADTIGLALTAAETGHLVLGTLHAASAAKTVDRIIDVFPAGEKEAA 252 LR+ PD +++GE+RD +T+ AL A++GHLV+ TLHA ++ + + RII+ +P +++ Sbjct: 193 LRQAPDCIMIGEIRDKETMAAALAYAQSGHLVVATLHANNSYQALTRIINFYPIENRQSL 252 Query: 253 RALLAEALEGVIAQTLLPTVDGLGRVAAHELLVATPAVRNLIREGRNAQLVSVMQAGGAQ 312 L+ L V++Q L+ ++G R AA E+++ T V LI +G Q+ ++ + Sbjct: 253 LTDLSSTLRAVVSQRLIGAING-DRRAAVEIMLNTRHVAELIEQGEITQIKEAIEKSMSP 311 Query: 313 AMQTLEASLAALVRQGRISEQTARA 337 QT E +L L+R G +++ A A Sbjct: 312 GSQTFEQALMQLIRDGVVTQDEALA 336 >gi|134095151|ref|YP_001100226.1| general secretion pathway protein E [Herminiimonas arsenicoxydans] Length = 567 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 118/216 (54%), Gaps = 29/216 (13%) Query: 75 LPTLGRFRVHAFHQ-----------QRGPAAAIRCLGQQPPSL--SELAAP----PLCAE 117 LP GRF + HQ Q G + +R L Q +L + P + Sbjct: 250 LPQDGRFAIKVRHQNIDVRISTMPTQYGESVVMRLLNQSGGTLMLDSIGMPVEMMKRFRQ 309 Query: 118 LALRPRGLVLVSGPTGAGKSSTLAAMVRHINEMRPVHILTIEDPIEFIHEPRRALVTQRE 177 + RP GLVLV+GPTG+GK++TL + +N + ++T+EDP+E+ R + Q + Sbjct: 310 IIRRPNGLVLVTGPTGSGKTTTLYGALAELNSLER-KLITVEDPVEY----RLPGINQVQ 364 Query: 178 IGTHVA-DFAQALRAALREDPDVLLVGELRDADTIGLALTAAETGHLVLGTLHAASAAKT 236 + + FA+ LR+ALR+DPDV+LVGE+RD +T + + AA TGHLVL TLH A T Sbjct: 365 VNDKIDLSFARVLRSALRQDPDVILVGEMRDQETAHIGMRAALTGHLVLSTLHTNDAIST 424 Query: 237 VDRIIDVFPAGEKEAARALLAEALEGVIAQTLLPTV 272 R++D+ R ++A +L+ V+AQ L+ + Sbjct: 425 PIRLLDM------GVPRYMVATSLQVVLAQRLVRVI 454 >gi|134094005|ref|YP_001099080.1| putative secretion pathway ATPase [Herminiimonas arsenicoxydans] Length = 603 Score = 96.7 bits (239), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/172 (38%), Positives = 98/172 (56%), Gaps = 14/172 (8%) Query: 105 SLSELAAPPLCA----ELALRPRGLVLVSGPTGAGKSSTLAAMVRHINEMRPVHILTIED 160 SL EL PP A +L RP G++LV+GPTG+GK++TL ++ + V++ T+ED Sbjct: 330 SLPELGFPPDDAARWDKLTARPHGIILVTGPTGSGKTTTLYTTLKAL-ATSEVNVCTVED 388 Query: 161 PIEFIHEPRRALVTQREIGTHVADFAQALRAALREDPDVLLVGELRDADTIGLALTAAET 220 PIE + + Q I FA +R+ +R+DPD++++GE+RD +T +A+ AA T Sbjct: 389 PIEMVEGSFNQMQVQHGIDLS---FADGVRSLMRQDPDIIMIGEIRDLETAEMAIQAALT 445 Query: 221 GHLVLGTLHAASAAKTVDRIIDVFPAGEKEAARALLAEALEGVIAQTLLPTV 272 GHLVL TLH A V R++ E LL L G++AQ L T+ Sbjct: 446 GHLVLSTLHTNDAPSAVMRLL------ELGVPYYLLESTLIGIMAQRLTRTL 491 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 523,812 Number of extensions: 17851 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 6 Length of query: 342 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 260 Effective length of database: 730,157 Effective search space: 189840820 Effective search space used: 189840820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)