BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3713.p
         (270 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093572|ref|YP_001098647.1| pyrroline-5-carboxylate reducta...   351   2e-98

>gi|134093572|ref|YP_001098647.1| pyrroline-5-carboxylate reductase
           (P5CR) (P5C reductase) [Herminiimonas arsenicoxydans]
          Length = 274

 Score =  351 bits (901), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/269 (64%), Positives = 219/269 (81%)

Query: 1   VKIAFIGGGNMASALIGGLVGKVAAAQDIHVVDLNADALQSLQDKFGVATAQTIDGAIAS 60
           +KI+FIGGGNMA+ALIGGL GK+ AAQ+IHV+D++ADAL  L  +FGV T+  ID  IA 
Sbjct: 5   LKISFIGGGNMAAALIGGLAGKLTAAQNIHVIDISADALAKLHAQFGVTTSIEIDARIAG 64

Query: 61  VDVVVLAVKPQQMREVVATLKPFIGAQLIVSIAAGIRMVDLSRWLDGHQAIVRAMPNTPA 120
            DV+VLAVKPQQM+ V   + P IG QL++SIAAGIR  DLSRWL+G+QAIVR MPNTPA
Sbjct: 65  SDVIVLAVKPQQMKGVATQILPHIGTQLVLSIAAGIRAADLSRWLNGYQAIVRTMPNTPA 124

Query: 121 LIGRGISGVVPHEQVSTLQRAQADTILKAVGETLWLAQEAQLDAVTAVSGSGPAYVFYFL 180
           LIG+GI+G+V    VS +QRA AD IL+AVGET+WL  E  +D VTAVSGSGPAYVFYF+
Sbjct: 125 LIGKGITGMVATAGVSDVQRAAADAILRAVGETVWLDDEKLIDPVTAVSGSGPAYVFYFI 184

Query: 181 EAMEQAAAQLGLSRQEGLELAKATFAGATELARRSEESVAILRERVTSKGGTTYAALTSL 240
           EAM+QAA ++GL+ ++G  LA +TF GA +LA ++ + V++LRERVTSKGGTTYAALTS+
Sbjct: 185 EAMQQAAQEMGLTAEQGNALAVSTFVGAAQLAAQASDPVSVLRERVTSKGGTTYAALTSM 244

Query: 241 EQSGVKAAIVTALQAAATRSKELGDEFGQ 269
           E+SGVK AI+ A++AAA R + LG+EFG+
Sbjct: 245 EESGVKQAIINAMKAAAARGQALGEEFGR 273


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.130    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 462,396
Number of extensions: 17501
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 190
Effective length of database: 736,747
Effective search space: 139981930
Effective search space used: 139981930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)