BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3712.p
         (252 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094483|ref|YP_001099558.1| lipoprotein precursor [Herminii...   215   2e-57
gi|134096132|ref|YP_001101207.1| protease [Herminiimonas arsenic...    73   1e-14
gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase [...    59   3e-10

>gi|134094483|ref|YP_001099558.1| lipoprotein precursor
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score =  215 bits (547), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 123/263 (46%), Positives = 153/263 (58%), Gaps = 38/263 (14%)

Query: 28  TADNDGYYTVKRGDTLYSIGRDFDQSPANLRTWNRLRNPDDLEVGQRILVRPPVGVVAR- 86
           TAD+  +YTVK+GDTLY I  DF QS + L TWN+L NP+D++V Q + V PP    AR 
Sbjct: 42  TADDRNFYTVKKGDTLYRIALDFGQSYSELVTWNKLANPNDIKVDQVLRVAPPDAPAARS 101

Query: 87  ---------TGAGQSPRPAASSASGTPRKSTT-----RP----------------ATKPA 116
                    TG+G   RP ++ A+ T    T+     RP                 T P 
Sbjct: 102 GGAQTGAVATGSGAEARPLSAPAASTAGNKTSPRGEKRPYSDSTLADMQKPEGAAVTTPP 161

Query: 117 TKPQDDDDDAPAPADA-------KLDWMWPTQGKSAPSADSYKKGIDISGSQGQSVVAAA 169
                 D  A  PA A        + WMWP +GK   + D  KKGIDI+G  GQ V+AA 
Sbjct: 162 KAVASSDKPAEIPAAAATGAEYETVSWMWPAEGKLVATFDDNKKGIDIAGKSGQQVLAAG 221

Query: 170 AGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNDSILVKEGQMVTRGQQIATMGNSDTNK 229
           AGKV YAG GIRGYGN+VI+KHT  LLS YAHN  I VKEGQ V++GQ+IA MG+SD + 
Sbjct: 222 AGKVMYAGSGIRGYGNLVIVKHTSTLLSAYAHNKIIHVKEGQSVSKGQKIADMGDSDADS 281

Query: 230 VKLYFEIRRNGKPVNVMALLPAR 252
           VKL+FEIR+ GKPV+    LP+R
Sbjct: 282 VKLHFEIRQQGKPVDPSKFLPSR 304


>gi|134096132|ref|YP_001101207.1| protease [Herminiimonas
           arsenicoxydans]
          Length = 452

 Score = 73.2 bits (178), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)

Query: 153 KGIDISGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSVYAHNDSILVKEGQM 212
           KG+ I  ++G  V A AAG+V +A   +RG+GN++I+ H  Q +++Y +N S+L   G  
Sbjct: 353 KGLFIRANEGTEVKAIAAGRVIFA-EWLRGFGNLIIVDHGSQYMTIYGNNQSVLKHAGDA 411

Query: 213 VTRGQQIATMGNSDTNKVK-LYFEIRRNGKPVN 244
           V  G  IA+ GNS  N+   LYFE+R  G+  +
Sbjct: 412 VKAGDVIASTGNSGGNEQSGLYFEMRHQGRAFD 444


>gi|134095961|ref|YP_001101036.1| putative metalloendopeptidase
           [Herminiimonas arsenicoxydans]
          Length = 233

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 7/103 (6%)

Query: 139 PTQGKSAPSADSYKKGIDISGSQGQSVVAAAAGKVTYAGHGIRGYGNMVIIKHTPQLLSV 198
           P  G+SA       +GID +   G  + AAA G VT A    + YGNM+ I H   +++ 
Sbjct: 116 PFSGRSA-----MHEGIDFAAPIGTPIRAAAGGVVTVAEFHPQ-YGNMMEIDHGNDMITR 169

Query: 199 YAHNDSILVKEGQMVTRGQQIATMGNSD-TNKVKLYFEIRRNG 240
           YAH   +L++ G +V RGQ IA +G +  +    L+FE+R  G
Sbjct: 170 YAHTSRLLMQVGDIVRRGQHIADIGTTGRSTGPHLHFEVRIKG 212


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 410,045
Number of extensions: 14960
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 252
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 172
Effective length of database: 736,747
Effective search space: 126720484
Effective search space used: 126720484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)