BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3707.p
         (284 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093580|ref|YP_001098655.1| 4-hydroxybenzoate octaprenyltra...   417   e-118
gi|134096069|ref|YP_001101144.1| protoheme IX farnesyltransferas...    68   6e-13

>gi|134093580|ref|YP_001098655.1| 4-hydroxybenzoate
           octaprenyltransferase (4-HB polyprenyltransferase)
           [Herminiimonas arsenicoxydans]
          Length = 284

 Score =  417 bits (1071), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/284 (76%), Positives = 245/284 (86%)

Query: 1   MDRLRLYALLVRAHKPIGILLLLWPTLIALWLAAGGPPDWPILVIYVLGTVLMRSAGCAI 60
           M+RL+LY  LVR +KPIGILLLLWPTL ALWLA+ G PDW +L I+ LGT+LMRSAGCAI
Sbjct: 1   MNRLQLYFRLVRLNKPIGILLLLWPTLWALWLASDGKPDWTLLAIFTLGTILMRSAGCAI 60

Query: 61  NDYADRDFDRHVKRTEQRPLTSGKIQSWEALMVAGVLALVSFLLILPLNALTLQLSVAAV 120
           NDYADRDFD++V+RT  RP+TSGKIQ  EAL+VA  LAL+SF LI PLN LT QLS+AAV
Sbjct: 61  NDYADRDFDKYVQRTVDRPVTSGKIQPREALLVALALALLSFALIWPLNTLTKQLSIAAV 120

Query: 121 LIAGSYPYFKRFFAIPQAYLGIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTE 180
           +IAG+YPYFKRFFAIPQAYLGIAFGFGIPMGFA+V  TVP AAW LLVAN+FWAVAYDTE
Sbjct: 121 IIAGTYPYFKRFFAIPQAYLGIAFGFGIPMGFAAVQNTVPAAAWWLLVANVFWAVAYDTE 180

Query: 181 YAMVDREDDLKIGIKTSAITFGRYDVAAVMLCYGVALALIWVVGLQYGLGLWFSAGMLVA 240
           YAMVDREDDLK+G+KTSAITFGR+DVAAVM CY V L LI++VG QYGL  WF+AGML+A
Sbjct: 181 YAMVDREDDLKLGMKTSAITFGRHDVAAVMFCYAVTLGLIFIVGWQYGLRTWFAAGMLIA 240

Query: 241 CGFAGYHYTLIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR 284
            G A YHYTLIR R+R  CFAAF +NNWLGAAIF GV LDYL+R
Sbjct: 241 TGCAIYHYTLIRARERAGCFAAFRHNNWLGAAIFGGVVLDYLIR 284


>gi|134096069|ref|YP_001101144.1| protoheme IX farnesyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 294

 Score = 67.8 bits (164), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 123/275 (44%), Gaps = 5/275 (1%)

Query: 15  KPIGILLLLWPTLIALWLAAGGPPDWPILVIYVLGTVLMRSAGCAINDYADRDFDRHVKR 74
           KP    L ++  +I ++LA    PDW I++   +G  L+  A  AIN   +R+ D  + R
Sbjct: 19  KPRVTQLAVFCAVIGMFLATPDLPDWKIVIAATIGIWLLAGAAFAINCLVEREIDSRMAR 78

Query: 75  TEQRPLTSGKIQSWEALMVAGVLALVSFLLILP-LNALTLQLSVAAVLIAGSYPYFKRFF 133
           T +RP+  G+I   + L+ +GV+      ++   +N LT+ L+ A  +            
Sbjct: 79  TARRPMAQGEITVPQTLVFSGVIGGAGMWVLYNFVNPLTMWLTFATFVGYAVIYTIILKP 138

Query: 134 AIPQAYL--GIAFGFGIPMGFASVTGTVPLAAWVLLVANIFWAVAYDTEYAMVDREDDLK 191
           A PQ  +  G++      +G+A+V   +P+ AW+L++    W   +    A+  R++  K
Sbjct: 139 ATPQNIVIGGLSGAMPPALGWAAVANDLPMQAWILVLIIFIWTPPHFWALALYRRDEYAK 198

Query: 192 IGIKTSAITFGRYDVAAVMLCYGVALALIWVVGLQYGLG--LWFSAGMLVACGFAGYHYT 249
            G+    IT G       +  Y +AL    ++    G+   ++     ++   F  Y + 
Sbjct: 199 SGLPMLPITHGTAFTQFHIWLYTIALVATTMLPFAVGMSGLIYLVVAAVLDVIFMWYAWQ 258

Query: 250 LIRERDRMRCFAAFNNNNWLGAAIFAGVALDYLMR 284
           + R    M     F  +    + +FA + +D+ +R
Sbjct: 259 VYRHYTDMIARKMFTYSIIYLSLLFAALLVDHYLR 293


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.144    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 543,719
Number of extensions: 22321
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 2
Length of query: 284
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 203
Effective length of database: 733,452
Effective search space: 148890756
Effective search space used: 148890756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)