BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3703.p (364 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 219 1e-58 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 217 9e-58 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 175 4e-45 gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 136 2e-33 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 127 9e-31 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 219 bits (559), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 172/291 (59%), Gaps = 6/291 (2%) Query: 1 MAAIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVS 60 MA + ++ + + +G V+ I I GEF ++GPSGCGK+TLLRM+AG +E Sbjct: 1 MALLEIRNLTRRFGDNT----VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPD 56 Query: 61 SGQIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDERVQR 120 +G+I++ + + P++R + VFQNYAL+PHMTV N+A+ L++ KSEI ++V Sbjct: 57 AGKILLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDE 116 Query: 121 AAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEI 180 A + L R P +LSGGQRQRV++ RA+V +P + L DEPLS LDA+LR QM++E+ Sbjct: 117 ALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIEL 176 Query: 181 QKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGS 240 L + T +YVTHDQ EA+ L R+ VMN+G EQ+ P +Y+ P + FVA FIG+ Sbjct: 177 INLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGT 236 Query: 241 PPMNLLRGKLSADGGSFEVDQGGAADTVRLPQALPAAAGQERILGVRPEHL 291 NL G ++ G + V+ G + + +RPE + Sbjct: 237 --CNLFDGTVTQIAGDTMLLDVPGMGAVKALTVAGVQVGSKGTIALRPEKI 285 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 217 bits (552), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 107/252 (42%), Positives = 165/252 (65%), Gaps = 10/252 (3%) Query: 3 AIHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVSSG 62 +I +K + K +G DV E GE ++GPSGCGK+TLLR++AGLE+ G Sbjct: 2 SIEVKNINKKFGNFVALNDV----SLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHG 57 Query: 63 QIVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGL----SKSEIDERV 118 Q+++ + +ER + VFQ+YAL+ HMTV++N+A+GL+++ S+S I E+V Sbjct: 58 QVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKV 117 Query: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRL 178 + +++L L +R P QLSGGQRQR+A+ RA+ +P V L DEP LDAK+R ++R Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 179 EIQKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFI 238 +++LH L TS++VTHDQ EA+ + ++++MN+G EQIG P +VY PA+ FV F+ Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 Query: 239 GSPPMNLLRGKL 250 G+ +NL RG++ Sbjct: 238 GN--VNLFRGRV 247 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 175 bits (443), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 97/257 (37%), Positives = 150/257 (58%), Gaps = 23/257 (8%) Query: 1 MAAIH-----------LKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTL 49 M+AIH L+ +R Y G + +++H + + G+ ++G SGCGK+T+ Sbjct: 1 MSAIHALPSHLAPHLSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTV 60 Query: 50 LRMVAGLEEVSSGQIVIGQRVVNDLE----PKERDIAMVFQNYALYPHMTVYQNMAYGLK 105 LR +AG E ++ G I +G + +++ P+ R I +VFQ+YAL+PH++V N+ +GL+ Sbjct: 61 LRAIAGFEPLTEGSITLGGKEISNAHFTATPETRQIGVVFQDYALFPHLSVADNVGFGLR 120 Query: 106 IQGLSKSEIDERVQRAAAILELGALL---ERTPRQLSGGQRQRVAMGRAIVRKPAVFLFD 162 K ER R AA+L L L ++ P +LSGGQ+QRVA+ RA+ +P + L D Sbjct: 121 -----KLAAPERQARIAALLTLVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLD 175 Query: 163 EPLSNLDAKLRVQMRLEIQKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTP 222 EP SNLD LR ++ E++ + + TT++ VTHDQ EA + ++ VM GV Q + Sbjct: 176 EPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSA 235 Query: 223 AEVYARPATTFVASFIG 239 +Y RPA FVA FIG Sbjct: 236 YNLYHRPANRFVADFIG 252 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 136 bits (342), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 130/227 (57%), Gaps = 10/227 (4%) Query: 4 IHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVSSGQ 63 I ++ ++ + + I+ +A GEFI ++G SGCGKSTLL ++AGL + + G Sbjct: 9 IDIQHAEMSFHTKKGVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGM 68 Query: 64 IVIGQRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGL-----KIQGLSKSEIDERV 118 ++ G R + P+ A+VFQN++L P +T Y+N+ + K++G K+++ R Sbjct: 69 LLCGNREIAGPSPER---AVVFQNHSLLPWLTCYENVYLAVERVFGKVEG--KAKLRART 123 Query: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRL 178 + A +++ L ++ P ++SGG +QRV + RA+ +P V L DEP LDA R ++ Sbjct: 124 RAALSLVGLTHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQD 183 Query: 179 EIQKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEV 225 E+ K+ A +T + VTHD EA+ L +++++ G + IG EV Sbjct: 184 ELLKIVAATGSTVVMVTHDVDEAVLLSDKIVMLTNGPSATIGEILEV 230 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 127 bits (319), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 82/228 (35%), Positives = 125/228 (54%), Gaps = 10/228 (4%) Query: 4 IHLKQVRKTYGAGAKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLEEVSSGQ 63 I +K V K YG+ V++ +A G+ +V+ GPSG GKSTL++ V GLE G Sbjct: 2 IEMKNVSKWYGS----FQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGS 57 Query: 64 IVIGQRVVNDLE---PKERD-IAMVFQNYALYPHMTVYQNMAYG-LKIQGLSKSEIDERV 118 I + V D + P R I MVFQN+ L+PH+++ +N+ G +++ G S+ E ER Sbjct: 58 ITVDGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERG 117 Query: 119 QRAAAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRL 178 + + L A ++ P QLSGGQ+QRVA+ RA+ P LFDEP S LD ++ + L Sbjct: 118 LKYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEM-INEVL 176 Query: 179 EIQKLHANLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVY 226 ++ A T + VTH+ A + R+I M++G + T E + Sbjct: 177 DVMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFF 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 624,653 Number of extensions: 23564 Number of successful extensions: 251 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 50 Length of query: 364 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 281 Effective length of database: 726,862 Effective search space: 204248222 Effective search space used: 204248222 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)