BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3702.p (315 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 513 e-147 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 118 4e-28 gi|134096588|ref|YP_001101663.1| putative transcriptional regula... 98 5e-22 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 83 2e-17 gi|134095239|ref|YP_001100314.1| LysR family transcriptional reg... 83 2e-17 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 513 bits (1322), Expect = e-147, Method: Compositional matrix adjust. Identities = 243/313 (77%), Positives = 274/313 (87%) Query: 1 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPL 60 MTLTELKYIVAVAREKHFGHAAEAC VAQPTLSVAIKKLEDELGV +FERGG+E+S+TPL Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPYLLPSLVKTMIERVPQM 120 G QIVAQAERVLEQTAAIKEIA QNKDPL GP RLGIIYTI PYLLP LVK MIERVPQM Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 121 PLILQENFTTRLIELLRQGELDAAIMALPFPEHGLNVLPLYDEEFMVALPRQHKWADRKQ 180 PL+LQENFT +L+E LRQGE+DAAI+ALP P+ GL V P+YDE F+VA+P+ H WA+R Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSS 180 Query: 181 IDARELKSETMLLLGNGHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSSLETIRHMVSSG 240 + LKSETMLLLGNGHCFRDQVLEVCPEMSRFST+GDGIARTFEGSSLETIRHMV+SG Sbjct: 181 VTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASG 240 Query: 241 IGVTVLPRASIPDADSRDGMVRYVPFVAPAPSRRVVIAWRKSFTRQAAIDAVHQAVLTCK 300 IG+TVLP+AS+PD + DGM+RY+PFV P PSRRVV+ WRKSFTR AI+ V QA+L+C Sbjct: 241 IGITVLPQASVPDMHTTDGMLRYIPFVQPGPSRRVVLVWRKSFTRGVAIEEVRQALLSCD 300 Query: 301 LNGVEMLTNETVT 313 L GV ML +E ++ Sbjct: 301 LPGVTMLPDEPLS 313 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 118 bits (295), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 15/285 (5%) Query: 3 LTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPLGA 62 L +L+Y V VA E HFG AA + QP LS AI+ LE LGV +F R V++TP G+ Sbjct: 5 LRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPAGS 64 Query: 63 QIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPYLLPSLVKTMIERVPQMPL 122 ++ +A+R+L+QTAA+ ++ + SG L L + T +LP ++ E P + + Sbjct: 65 ALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPGVEI 124 Query: 123 ILQENFTTRLIELLRQGELDAAIMALPFPEHG---LNVLPLYDEEFMVALPRQHKWADRK 179 L+E T ++ L QG +D ++ P P+ L+ LP+ E ++A P+ K K Sbjct: 125 DLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKALKGK 184 Query: 180 QIDARELKSETMLLLGN---GHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSSLETIRHM 236 Q A + +E L++ F D +L + G E ++TI + Sbjct: 185 QSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQ------EAIQMQTIIGL 238 Query: 237 VSSGIGVTVLPRASIPDADSRDGMVRYVPFVAPAPSRRVVIAWRK 281 VS+G+G+ ++P++ ++ + V Y P P +AWR+ Sbjct: 239 VSAGMGIALVPQSV---SNLKRPGVDYKPLANKTPLVETGLAWRR 280 >gi|134096588|ref|YP_001101663.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 312 Score = 98.2 bits (243), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 72/192 (37%), Positives = 98/192 (51%), Gaps = 9/192 (4%) Query: 1 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPL 60 M + +L Y+V +AREKHF AAE C V+QP LS A++ LE ELGV I +RG TP Sbjct: 1 MFVRQLDYLVTLAREKHFARAAEICCVSQPALSAAVRNLETELGVAIVQRGQRFQGFTPE 60 Query: 61 GAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPY--LLPSLVKTMIERVP 118 G +I+ A + L +++ A+ ++ LSG LRLG I T P LL + + Sbjct: 61 GERILDWARQTLAALEGMRQEASMSRVKLSGTLRLGAIPTTMPIVSLLTGPCRAQHADLR 120 Query: 119 QMPLILQENFTTRLIELLRQGELDAAIMALPFPE-HGLNVLPLYDEEFMVALPRQHKWAD 177 Q L L T ++ L ELD + L G +V PLY E +M+ Q D Sbjct: 121 QRVLSLS---TEEIMRRLDDFELDIGLTYLEDQRLSGFHVQPLYRERYMLLARDQLAMGD 177 Query: 178 RKQI---DAREL 186 R +I DA EL Sbjct: 178 RTEISWEDAAEL 189 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 68/268 (25%), Positives = 120/268 (44%), Gaps = 11/268 (4%) Query: 1 MTLTELKYIVAVAREK-HFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEV-SVT 58 M L +L+++ R+ + AA+A F +QP +S AI +LE+ELGV IF R G + +T Sbjct: 1 MNLHQLRFVREAVRQNFNLTEAAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLT 60 Query: 59 PLGAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPYLLPSLVKTMIERVP 118 G ++ E ++ + +K I N+ SG + +T Y LP +V+ ++ P Sbjct: 61 EPGRAVLKSVEAIMLEIEGLKRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFP 120 Query: 119 QMPLILQENFTTRLIELLRQGELDAAIMALPFPE-HGLNVLPLYDEEFMVALPRQHKWAD 177 ++ L L + ++ E++ + D AI GL LP Y E + LP H Sbjct: 121 KVRLSLLQGNPKQIAEMVLMDQADLAIATEAIANMDGLISLPCYQWEHQIVLPLDHPLLK 180 Query: 178 RKQIDARELKSETMLLLGNGHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSSLETIRHMV 237 K I EL + ++ + R+++ F+ E + I+ V Sbjct: 181 SKSITLEELAAYPIITYDSAFAGRNKIDHA------FNLRNLKPDILLEAIDADVIKTYV 234 Query: 238 SSGIGVTVLPRASIPDADSRDGMVRYVP 265 G+G+ ++ A + RD +R +P Sbjct: 235 ELGMGIGII--AGMAFDTERDKNLRAIP 260 >gi|134095239|ref|YP_001100314.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 313 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 53/183 (28%), Positives = 96/183 (52%), Gaps = 10/183 (5%) Query: 1 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPL 60 M + +Y++A+ RE HFG+AA++C V+QPTLS IK+LE+++GV I G +T Sbjct: 1 MIVRNFEYLLALHREGHFGNAAKSCNVSQPTLSAGIKQLEEDMGVEIVRHGRRYDGLTSE 60 Query: 61 GAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGII-YTIGPYLLPSLVKTMIERVPQ 119 G ++++ A+++ + ++ + + + G RLGI+ T G + P+L + E+ P Sbjct: 61 GMRVLSWAQQMYDDCKGLEREISALRRGIEGKFRLGILPGTAG--VAPTLSIALAEKTPL 118 Query: 120 MPLILQENFTTRLIELLRQGELDAAIMAL-PFPEHGLNVLPLYDEEFMV------ALPRQ 172 + + + + L++ +R+ LD A+M L P + LY E + PR Sbjct: 119 LQQSILVSGASSLLQAIRENNLDIALMHLEDIPGEDFDTHLLYRERIFLFHAARTQQPRS 178 Query: 173 HKW 175 W Sbjct: 179 TTW 181 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 582,034 Number of extensions: 23954 Number of successful extensions: 102 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 11 Length of query: 315 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 233 Effective length of database: 730,157 Effective search space: 170126581 Effective search space used: 170126581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)