BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3701.p
         (303 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096549|ref|YP_001101624.1| hypothetical protein HEAR3402 [...   123   9e-30

>gi|134096549|ref|YP_001101624.1| hypothetical protein HEAR3402
           [Herminiimonas arsenicoxydans]
          Length = 269

 Score =  123 bits (309), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 104/204 (50%)

Query: 72  VQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERTQWYFQRYVSHL 131
            Q  HK++I+ +G D +GK G ++ +  +++P   R  A  AP   E+   +  R    +
Sbjct: 54  AQRRHKLLIILQGMDTSGKDGAVRGVFGKIDPLGVRSVAFKAPTPVEKDHDFLWRVHQQV 113

Query: 132 PAAGEIVLFDRSWYNRAGVERVMGFCTDEQYEEFFRSVPEFERMLTRAGIQVIKYWFSIT 191
           P  GE+ +F+RS Y    + RV  +  D++    +  +  FE+ML+  G  ++K++  I+
Sbjct: 114 PGNGELTIFNRSHYEDVLITRVHDWIDDKECARRYEHIRSFEKMLSETGTVILKFFLHIS 173

Query: 192 DEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHIPEAPWWVVQAVD 251
            +EQ  R   RI DP K WK  P DLE R+ W +Y +    M+  T    APW+V+ A  
Sbjct: 174 SDEQKKRLEERIADPDKHWKFDPNDLEERKYWNDYQRLYAKMIAETDADHAPWYVIPADS 233

Query: 252 KKKARLNCIQHLLQQMPYAEVPHP 275
           K    L     +++ +   ++ +P
Sbjct: 234 KTHRNLAIASIMVETLQKLKLAYP 257


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 546,031
Number of extensions: 19969
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 222
Effective length of database: 733,452
Effective search space: 162826344
Effective search space used: 162826344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)