BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3700.p
         (204 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094516|ref|YP_001099591.1| hypothetical protein HEAR1291 [...   176   6e-46

>gi|134094516|ref|YP_001099591.1| hypothetical protein HEAR1291
           [Herminiimonas arsenicoxydans]
          Length = 177

 Score =  176 bits (447), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 120/180 (66%), Gaps = 7/180 (3%)

Query: 24  ILSSSKTKRWHGNVEAIKAEFLNGVITQMTSYGDRVHFSMFGSVQKPHYEVINSFDKKMA 83
           IL++ ++KRW+G+++ ++A++L GV  QM +YG+RV F++ G  Q+P+Y+V N+FDKKMA
Sbjct: 5   ILNTKRSKRWNGSMDTLEADYLKGVTAQMKAYGERVQFALSGPGQRPNYQVTNTFDKKMA 64

Query: 84  FDGNHHLHRAEETEFGPGNVTPIFTLDQIKRIVATGGSGTRSTPRSARAASARSAGGTAR 143
           FDGNHHL RAEE EF  GN T + TL QI++ +A  G G   T  S R      +G    
Sbjct: 65  FDGNHHLLRAEEHEFAAGNATVVLTLQQIEQTIA--GIGMVKTTSSVRKTRVVGSG---- 118

Query: 144 PTTAAARAREAVDGEKYAYFKANRHMLPDEINQHSDEISKLMLNGMSAEQAFGEVISKYF 203
            T  AA+  + +D +KY YFK N   LP+ I  +S ++S LM  GMSAE AFGE++ +YF
Sbjct: 119 -TKVAAKPGDLIDIQKYEYFKNNMQKLPEGIRAYSQQVSALMKQGMSAEAAFGEIVQQYF 177


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.129    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 279,637
Number of extensions: 8726
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 127
Effective length of database: 746,632
Effective search space: 94822264
Effective search space used: 94822264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)