BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3698.p
         (318 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094932|ref|YP_001100007.1| AraC family transcriptional reg...   158   4e-40

>gi|134094932|ref|YP_001100007.1| AraC family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 366

 Score =  158 bits (399), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 161/320 (50%), Gaps = 9/320 (2%)

Query: 4   RDTAFLIFADCSMLDFTGPLSAFDAANRV-----SGQALYRLTLYSEAGGMIRSSAGALI 58
           +    ++F    + D  G    F   +++     +G+  Y ++L S  GG+I+SSA   I
Sbjct: 16  KHIGIIVFEGVILADVIGAADVFGVGDKLISSVFAGETGYAISLLSLYGGVIKSSASVEI 75

Query: 59  QTERIG---RASFDTLVVAGGGAPREGLVSPALRRYIVRAAARSRRIAGVCTGAFVLAAA 115
            T  +    + +FDTL++A G       + P +  ++ +A  + RRI  VCTG FV+AAA
Sbjct: 76  MTLPLSSHEQHTFDTLIIASGTGNFAAYLEPGMIEWLQKAKNKVRRIGAVCTGVFVMAAA 135

Query: 116 GVLDGRHATTHWRMAAKLQQMHPQVKVDSDRIYSRDGKVWTSAGISAGIDLALALIEEDH 175
           G+LD R ATTHW +  KL    PQ+KV+ D   + D  ++T++ +    ++AL+ +E D 
Sbjct: 136 GLLDNRRATTHWVLQDKLIHEFPQIKVERDATMTEDDGIFTASDVGMASEMALSFLESDL 195

Query: 176 GVELARSVARELVVYHRRPGGQSQFSALQEMD-GGSERIRRALGFAREHLQHELTVDLLA 234
           G  +A+ VA  LVV  RR    +    ++  +   + +I++A  +  EH+   + +   A
Sbjct: 196 GPSVAKRVADSLVVCQRRRDHPTTVRPVRVAEPSKNNKIQQASRWFAEHMAEPINILSAA 255

Query: 235 EVACLSRRQFDRTFAAETGQTPARAIEQMRAEAARLRIEQSQDSLESIARATGFGDADRM 294
               +S R F R F  ETG TP   +  +R EA R ++ ++   ++ IAR  GF   + +
Sbjct: 256 NFVSMSERNFQRQFKRETGWTPHEFLLHLRLEAVRQQLTETDLPVDKIARRCGFLSGEHV 315

Query: 295 RRACLRLFGQPPQAMRRLAR 314
            +   +     P   RR  R
Sbjct: 316 SKLFRKHLSVSPCEYRRNER 335


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 576,896
Number of extensions: 22324
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 236
Effective length of database: 730,157
Effective search space: 172317052
Effective search space used: 172317052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)