BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3694.p
         (336 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096601|ref|YP_001101676.1| putative monooxygenase [Hermini...   400   e-113

>gi|134096601|ref|YP_001101676.1| putative monooxygenase
           [Herminiimonas arsenicoxydans]
          Length = 333

 Score =  400 bits (1028), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/324 (60%), Positives = 250/324 (77%), Gaps = 3/324 (0%)

Query: 3   PFSVLDLSPINQGSSAAQAFQNSKELAQRAEALGYRRYWLAEHHNMPGIASAATALVISH 62
           P SVLDLSPI    + A AF  S +LAQR E  GY RYWLAEHH+MPGIASAATA+VI +
Sbjct: 8   PLSVLDLSPILVDGTPADAFHRSLDLAQRVEKRGYNRYWLAEHHSMPGIASAATAVVIGY 67

Query: 63  IAAHTRTIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARALRR 122
           +A  T TIRVGSGGIMLPNH+PLV+AEQFGTLESLYPGRIDLGLGRAPGSDQ TARALRR
Sbjct: 68  VAGGTSTIRVGSGGIMLPNHAPLVVAEQFGTLESLYPGRIDLGLGRAPGSDQATARALRR 127

Query: 123 HMGGDTADNFPQDVLELQQYFDEPSDYQA-LRAVPGAGLKVPLWLLGSSMFSAQLAAELG 181
            +  D ++ FP+ + EL+ +  +P+D  A ++A+PGAGL +P+WLLGSS +SAQLA  LG
Sbjct: 128 EISDDGSE-FPRQLNELRAFL-QPADTHARVQAIPGAGLNIPIWLLGSSSYSAQLAGYLG 185

Query: 182 LPFAFASHFAPGFMKSAVQIYRERFKPSANLKKPYVMLALNVFAADTQRQAERLFTSLQQ 241
           LPFAFA  F+P +M +A+++YR+ F+PS  L KPY M+ +N+FAADT  +A+ L TS QQ
Sbjct: 186 LPFAFAGQFSPDYMLTALELYRQTFRPSQALDKPYAMVGVNIFAADTDEEAQHLATSQQQ 245

Query: 242 QFLNLIRGTPGQLRPPVEDIDALWQPGEQAHVERSLACAVVGDRETVQEGLQAFIDEHAP 301
             L+L+RGTPG+L PP+E++D +W P E+A VE  L  +++G+  TVQ+ LQAF+D    
Sbjct: 246 MHLDLVRGTPGKLPPPIENMDDVWLPHERASVESMLRASIIGNAATVQQKLQAFLDATHA 305

Query: 302 DELIITAQIFDHAARLHSFEIAAE 325
           DE+II   IFDHAAR+ S+EI A+
Sbjct: 306 DEIIINTMIFDHAARVRSYEIVAD 329


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 652,486
Number of extensions: 26794
Number of successful extensions: 80
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 254
Effective length of database: 730,157
Effective search space: 185459878
Effective search space used: 185459878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)