BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3690.p (732 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094835|ref|YP_001099910.1| copper transporting ATPase [Her... 1055 0.0 gi|134096449|ref|YP_001101524.1| copper transporting ATPase [Her... 173 2e-44 gi|134094777|ref|YP_001099852.1| copper transporting ATPase CopA... 157 2e-39 gi|134094759|ref|YP_001099834.1| putative toxic metal efflux pum... 123 4e-29 gi|134094792|ref|YP_001099867.1| cation-transporting ATPase [Her... 122 8e-29 >gi|134094835|ref|YP_001099910.1| copper transporting ATPase [Herminiimonas arsenicoxydans] Length = 697 Score = 1055 bits (2728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/713 (73%), Positives = 619/713 (86%), Gaps = 21/713 (2%) Query: 20 AIPSAAQTARWMFDPKIVKPALADSFRKLSPRVQWRNPVMFVVYLGSILTTLLFIQALVG 79 A P ++ + +FD ++ PA+ D+F+KL+PR QWR+PVMFVVY+GSI+TTLLFIQ+L+G Sbjct: 6 ATPVVSRKSLTLFDTAMIGPAIVDAFKKLTPRAQWRSPVMFVVYVGSIITTLLFIQSLIG 65 Query: 80 KGEAPAGFIFAIAAWLWFTVLFANFAEALAEGRSKAQAAALRGVKKSVQAKKLRSADYTR 139 +GEA +GFI AI+ WLWFTVLFANFAE+LAEGRSKAQAA+LR +K++V AKKL + + Sbjct: 66 QGEANSGFIAAISIWLWFTVLFANFAESLAEGRSKAQAASLRALKQTVLAKKLATPKHGT 125 Query: 140 GMDAANAARQCEVVEGGSLRKGDLVFIEAGDTVPADGDVIEGVATVDESAITGESAPVIR 199 A+ A LRKGD V +EAGD +P DG+VIEGVA+VDESAITGESAPVIR Sbjct: 126 TWLPASPA---------DLRKGDTVLVEAGDVIPVDGEVIEGVASVDESAITGESAPVIR 176 Query: 200 ESGGDFSAVTGGTRVLSDWIVVRVSVNPGEAFLDRMIAMVEGARRQKTPNELALTLLLVA 259 ESGGDFS+VTGGTRVLSDW+VVR++VNPGEAF+DRMIAMVEGA+RQKTPNE+ALT+LLVA Sbjct: 177 ESGGDFSSVTGGTRVLSDWLVVRIAVNPGEAFIDRMIAMVEGAKRQKTPNEIALTILLVA 236 Query: 260 LTLVFLLVTVTLLPFSIFSVTAAGTGSPVTVTALIALLVCLIPTTIGGLLSAIGVAGMSR 319 LT++FL+VTVTLLPFS++SV AG G+P+T+T LIALLVCLIPTTIGGLLSAIGVAGMSR Sbjct: 237 LTIIFLIVTVTLLPFSLYSVQVAGAGTPITITVLIALLVCLIPTTIGGLLSAIGVAGMSR 296 Query: 320 MMQANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQAAAFMPAPGVTERELADVAQLAS 379 MMQANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQA+ F PAPG+T+ +LADVAQLAS Sbjct: 297 MMQANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFYPAPGITQIQLADVAQLAS 356 Query: 380 LADETPEGRSIVVLAKNRFNLREREMAGLGAEFIPFSAQTRVSGIDIGHRRIRKGAADAI 439 LADETPEGRSIV+LAK ++N+RER++A L A F+ FSAQTR+SG+D+G R IRKGAAD + Sbjct: 357 LADETPEGRSIVILAKQQYNIRERDIAALNAHFVHFSAQTRMSGVDMGERVIRKGAADTV 416 Query: 440 RKLVRSADQRLPAQVESDVEAIARRGGTPLVVIEWNNEAAVIHQGAPIRILGTVELKDIV 499 +K + + +V + V+ I+RRG TPLVV++ R++G VELKDIV Sbjct: 417 KKHIELLGRSFLIEVSNTVDDISRRGSTPLVVVDDG------------RVMGVVELKDIV 464 Query: 500 KGGIKERFGELRRMGIKTIMITGDNRLTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAE 559 KGGIKERF ELRRMGIKT+MITGDN+LTAAAIAAEAGVDDFLAEATPEQKL LIR++Q++ Sbjct: 465 KGGIKERFAELRRMGIKTVMITGDNKLTAAAIAAEAGVDDFLAEATPEQKLKLIREYQSQ 524 Query: 560 GKLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQML 619 G+LVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKL+EIVEIGKQML Sbjct: 525 GRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLLEIVEIGKQML 584 Query: 620 MTRGSLTTFSIANDVAKYFAIIPAMFVANYPQLGALNVMRLASPESAIMSAVIFNALVIV 679 MTRGSLTTFSIANDVAKYFAIIPA FV YPQL AL++M+L+SP SAIMSAVIFNAL+IV Sbjct: 585 MTRGSLTTFSIANDVAKYFAIIPAAFVTTYPQLKALDIMQLSSPSSAIMSAVIFNALIIV 644 Query: 680 ALIPLALRGVRYRALGAAVLLRRNLLIYGVGGLLVPFVGIKLIDMLLAAFGLV 732 LIPLAL+GV+YRA+GAA LLRRN+LIYG+GG+LVPFVGIKLIDM+L FGL+ Sbjct: 645 VLIPLALKGVKYRAVGAAALLRRNMLIYGLGGILVPFVGIKLIDMILTVFGLI 697 >gi|134096449|ref|YP_001101524.1| copper transporting ATPase [Herminiimonas arsenicoxydans] Length = 815 Score = 173 bits (439), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 151/512 (29%), Positives = 244/512 (47%), Gaps = 47/512 (9%) Query: 110 EGRSKAQ-AAALRGVKKSVQAKKLRSADYTRGMDAANAARQCEVVEGGSLRKGDLVFIEA 168 E R+K Q A+A+R ++K + SA RG + + A ++R GD+V + Sbjct: 277 EARAKKQTASAIRALQK----LRPESARVRRGGNDIDVAIN-------AVRVGDIVVVRP 325 Query: 169 GDTVPADGDVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLSDWIVVRVSVNPG 228 G+ + DG V+EG + VDES ITGES PV+++ G VTG ++VR Sbjct: 326 GERIAVDGTVLEGSSQVDESLITGESLPVLKQVG---DKVTGAAINADGVLLVRTDAIGA 382 Query: 229 EAFLDRMIAMVEGARRQKTPNELALTLLLVALTLVFLLVTVTLLPFSIFSVTAAGTGSPV 288 E L R+I MVE A+ +K P + L+ ++ +F+ V + + F+ AG+ Sbjct: 383 ETTLSRIIRMVENAQSEKAP----IQRLVDKVSAIFVPVVLAIALFTFIGWWLAGSSMET 438 Query: 289 TVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIATSGRAVEAAGDVDVLLLDKTG 348 + + +LV P +G +AG + ++ A+E A + ++ DKTG Sbjct: 439 AIINAVTVLVIACPCALGLATPTAIMAGTGVAARYGILIKDAEALEIAHRITTVVFDKTG 498 Query: 349 TITLGNRQAAAFMPAPGVTERELADVAQLASLADETPEGRSIVVLAKNRFNLREREMAGL 408 T+T G Q + F+ G+ E +L +A E P GR++V A R +L E + Sbjct: 499 TLTQGKPQVSEFL-TNGIAEDKLLQLAAAIQRDSEHPLGRAVVERAAAR-HLALLESTAV 556 Query: 409 GAEFIPFSA-QTRVSG--IDIGHRRIRKGAADAIRKLVRSADQRLPAQVESDVEAIARRG 465 A +P Q V G + +G+ R+ + + + A Q + G Sbjct: 557 QA--LPGRGMQATVEGRPLQLGNARLMGELGIDMTQFAQRAQQ------------LEESG 602 Query: 466 GTPLVVIEWNNEAAVIHQGAPIRILGTVELKDIVKGGIKERFGELRRMGIKTIMITGDNR 525 T + W E GA +LG + +D +K + L +GI+TI++TGDN+ Sbjct: 603 HT----VSWLAET-----GAQAGVLGLIAFRDTIKHSAPQAVERLHALGIQTILLTGDNQ 653 Query: 526 LTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAEGKLVAMTGDGTNDAPALAQADVAVAM 585 A A+ + G+D LA+ P K A I Q EG++VAM GDG NDAPALA A V +AM Sbjct: 654 GNANAVGRQLGIDRVLAQVLPGDKSAKISALQDEGQIVAMVGDGINDAPALAAAHVGIAM 713 Query: 586 NSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQ 617 +GT A A + + +P + + ++I ++ Sbjct: 714 ATGTDVAMHAAGITLMRGDPALVADAIDISRR 745 >gi|134094777|ref|YP_001099852.1| copper transporting ATPase CopA [Herminiimonas arsenicoxydans] Length = 790 Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 136/445 (30%), Positives = 204/445 (45%), Gaps = 43/445 (9%) Query: 161 GDLVFIEAGDTVPADGDVIEGVATVDESAITGESAPVIRESGGDFSAVTGGTRVLSDWIV 220 GD + + G+ VP DG V EG + VDES +TGE PV + G V G T S +V Sbjct: 300 GDALRVRPGEKVPVDGVVAEGESAVDESMLTGEPMPVTKRQG---DKVIGATLNTSGSLV 356 Query: 221 VRVSVNPGEAFLDRMIAMVEGARRQKTPNE-----LALTLLLVALTLVFLLVTVTLLPFS 275 + + L +++ MV A+R + P + +A +LV + + FL TL+ + Sbjct: 357 IHSEKVGSQTMLSQIVQMVAQAQRSRAPMQRLADVVAGYFVLVVVGIAFL----TLVGWG 412 Query: 276 IFSVTAAGTGSPVTVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIATSGRAVEA 335 +F + V +A+L+ P +G +A R ++ A+E Sbjct: 413 LFGPEPSWVFGFVNA---VAVLIIACPCALGLATPMSIMAATGRAATQGMLFRDAAAIEG 469 Query: 336 AGDVDVLLLDKTGTITLGNRQAAAFMPAPGVTERELADVAQLASLADETPEGRSIVVLAK 395 V+ L++DKTGT+T G + A G TE + VA E P ++IV A Sbjct: 470 MRKVNTLIVDKTGTLTEGKPAFDRVIAAQGQTETSVLQVAASIDQGSEHPLAQAIVTEA- 528 Query: 396 NRFNLREREMAGLGAEFIPFSAQTRVSGIDIGHRRIRKGAA--DAIRKLVRSADQRLPAQ 453 R+R + E S+ V GI GHR A D + RS Sbjct: 529 -----RKRSLTLDKPESFESSSGIGVRGIVAGHRIALGNTALMDEEKIEWRS-------- 575 Query: 454 VESDVEAIARRGGTPLVVIEWNNEAAVIHQGAPIRILGTVELKDIVKGGIKERFGELRRM 513 + + E + G A+V+H +++G V + D +K E LR Sbjct: 576 LSTQAEELRSEG------------ASVMHVAVDGKLIGLVAVSDPIKTTTMEALSVLREA 623 Query: 514 GIKTIMITGDNRLTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAEGKLVAMTGDGTNDA 573 GI IM TGD TA ++A + G+ + E P+ KLAL+ + Q EGK+VAM GDG NDA Sbjct: 624 GINVIMATGDGVTTAKSVAGKLGISEVHGEVKPQDKLALVERLQKEGKVVAMAGDGINDA 683 Query: 574 PALAQADVAVAMNSGTQAAKEAGNM 598 PALA+ADV +AM +GT A + ++ Sbjct: 684 PALAKADVGIAMGTGTDVAINSAHL 708 >gi|134094759|ref|YP_001099834.1| putative toxic metal efflux pump [Herminiimonas arsenicoxydans] Length = 793 Score = 123 bits (308), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 130/475 (27%), Positives = 204/475 (42%), Gaps = 52/475 (10%) Query: 153 VEGGSLRKGDLVFIEAGDTVPADGDVIEGVATVDESAITGESAPVIRESGGDFSAVTGGT 212 +E ++ G ++ + G+ + DG +I G +T++++ ITGES PV +S GD V GT Sbjct: 305 IEAKTIALGAIIRVRPGERIALDGKLINGQSTINQAPITGESVPV-EKSIGD--TVFAGT 361 Query: 213 RVLSDWIVVRVSVNPGEAFLDRMIAMVEGARRQKTP-----NELALTLLLVALTLVFLLV 267 + V+ L R+I VE A+ + P ++ A + L+ Sbjct: 362 INDAGSFEFEVTARSESTTLARIIHAVEEAQGSRAPTQRFVDQFAKIYTPAVFVVAVLVA 421 Query: 268 TVTLLPFSIFSVTAAGTGSPVTVTALIALLVCLIPTTIGGLLSAIGVAGMSRMMQANVIA 327 V L F + V A LV P TI V+G++ + ++ Sbjct: 422 LVPPLAFGQPWYDWIYKALVLLVVACPCALVISTPVTI--------VSGLAAAARKGILI 473 Query: 328 TSGRAVEAAGDVDVLLLDKTGTITLGNRQAAAFMPAPGVTERELADVAQLASLADETPEG 387 G +E + L LDKTGT+TLG ++P+ L LA +D P Sbjct: 474 KGGVYLEQGRKLSWLALDKTGTLTLGKPSVTDYLPSAVSQSNTLEIATSLAGRSDH-PVS 532 Query: 388 RSIVVLAKNRFNLRE-----REMAGLGAEFIPFSAQTRVSGIDIGHRRIRKGAADAIRKL 442 R+I V R R + G G E Q G HR L Sbjct: 533 RAISVYGDAHITARNEVDNFRALLGRGVEG-HIHGQLYWLG---NHR------------L 576 Query: 443 VRSADQRLPAQVESDVEAIARRGGTPLVVIEWNNEAAVIHQGAPIRILGTVELKDIVKGG 502 +Q P ++ +EA+ R+G T +++ G+ +L + D ++ Sbjct: 577 ATEREQITP-ELAGQLEALERQGRTAVML------------GSAEHVLAIFGVADTLRET 623 Query: 503 IKERFGELRRMGIKTIMITGDNRLTAAAIAAEAGVDDFLAEATPEQKLALIRQHQAEGKL 562 ++ EL + +KT+M+TGDN TA AIA E G+DD PE KL +I A+G Sbjct: 624 SRQAIAELHELNVKTVMLTGDNVHTAQAIATEVGIDDARGNQLPEDKLQVIEALAAQGAT 683 Query: 563 VAMTGDGTNDAPALAQADVAVAMN-SGTQAAKEAGNMVDLDSNPTKLIEIVEIGK 616 + M GDG NDAPALA+A + AM +GT A E ++ +D + K+ V + + Sbjct: 684 IGMVGDGINDAPALAKAHIGFAMGAAGTDTAIETADVALMDDDLRKVPAFVRLSR 738 >gi|134094792|ref|YP_001099867.1| cation-transporting ATPase [Herminiimonas arsenicoxydans] Length = 845 Score = 122 bits (305), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 143/535 (26%), Positives = 230/535 (42%), Gaps = 76/535 (14%) Query: 151 EVVEGGSLRKGDLVFIEAGDTVPADGDVIEGVA-TVDESAITGESAPVIRESGGD----- 204 + ++ L +GDL+ + GD + ADG ++ G VDES +TGE+ PV + +G D Sbjct: 112 QTIDSRMLVRGDLLILSEGDRIAADGFLMSGTGLQVDESLLTGEAVPVYKTAGNDQISTG 171 Query: 205 ------FSAVTGGTRVLSDWIVVRVSVNPGEAFLDRMIAMVEGARRQKTPNELALTLLLV 258 S++ GT V+ + V+ + + R+ + + + +P + ++ L+ Sbjct: 172 YPADISSSSLYAGTLVVQGDGIAEVTKTGIHSEMGRIGSALNDITPESSPLQKQMSRLIK 231 Query: 259 ALTLVFLLVTVTLLPFSIFSVTAAGTGSPVTVTAL---IALLVCLIPTTIGGLLSAIGVA 315 T FL + + SI A G + L IAL + ++P +L+ Sbjct: 232 --TFAFLGIAL-----SIVLALAEGLLHGDWLQGLLAGIALAMSMMPEEFAVILTVFPAL 284 Query: 316 GMSRMMQANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQAAAF--------------M 361 G R+ +A V+ A+E G VL DKTGT+T + A M Sbjct: 285 GAWRLARAKVLTRRLSAIETLGATSVLCTDKTGTLTENIMRVARLYIDDEEIDIEKMTEM 344 Query: 362 PAPGVTERELADVAQLASLADETPEGRSIVVLAKNRFNLREREMA--------GLGAEFI 413 P P + L D++ LAS LA +F R + GL +E Sbjct: 345 PLPQ-SYHTLLDLSILASRVLPLDPMEKAFHLAGKKFLPRTKSQGEQQLIREYGLTSELR 403 Query: 414 PFSAQTRVSGIDIGHRRIRKGAADAIRKLVRSADQRLPAQVESDVEAIARRGGTPLVVIE 473 S Q S H KGA +AI +L R D +++ + + +A G L V Sbjct: 404 AMS-QGWTSPDQDAHVVAAKGAPEAIAELCR-LDAMSRSRILASADRMAADGLRVLGVAR 461 Query: 474 WNNEAAVI---HQGAPIRILGTVELKDIVKGGIKERFGELRRMGIKTIMITGDNRLTAAA 530 + + + G + L D ++ I + R GI+ IMITGD +TA Sbjct: 462 ATFDGDIWPADQRAFQFSFSGLIGLADPLRSDIPGAIRQCRAAGIRIIMITGDYPVTAMT 521 Query: 531 IAAEAGVDD-------------------------FLAEATPEQKLALIRQHQAEGKLVAM 565 IA +AG+ D A +P QKL +++ +A+G++VAM Sbjct: 522 IARQAGLADGSVLTGEMMAALDDAQLSERIKTTTVCARISPGQKLRIVQALKADGEVVAM 581 Query: 566 TGDGTNDAPALAQADVAVAM-NSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQML 619 TGDG NDAPAL A V +AM GT+ A+EA ++V LD + ++ + IG+ + Sbjct: 582 TGDGVNDAPALKAAHVGIAMGQRGTEVAREAASLVLLDDHFASIVRAIRIGRTIF 636 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,277,288 Number of extensions: 51419 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 254 Number of HSP's successfully gapped: 13 Length of query: 732 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 643 Effective length of database: 707,092 Effective search space: 454660156 Effective search space used: 454660156 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)