BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3689.p
         (203 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094834|ref|YP_001099909.1| potassium-transporting ATPase s...   210   5e-56

>gi|134094834|ref|YP_001099909.1| potassium-transporting ATPase
           subunit C [Herminiimonas arsenicoxydans]
          Length = 190

 Score =  210 bits (534), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/183 (56%), Positives = 134/183 (73%)

Query: 9   LRPAITLFILLGVLLGGLYPLLVTGLAQAFFPQQANGSLIERQGQLVGSELIGQNFTSPA 68
           LRPA+ LF +L ++ G +YP  +TG+ +  F +QA GSL+ R GQ+VGS LIGQ F+SP 
Sbjct: 5   LRPALVLFAVLTLICGVIYPYAITGIGKLAFSEQAEGSLVSRNGQIVGSSLIGQAFSSPQ 64

Query: 69  YFWGRPSAAGTFPNNGMSSGGSNLGPTNPALKQAAEDRAKALQEADPDNKAAIPIDLLTA 128
           YFWGRPSA    PNN  +S GSN GP N AL  + + R  AL+ ADP N   +P+DL+TA
Sbjct: 65  YFWGRPSATSPMPNNAAASSGSNQGPLNLALIDSVKGRIAALKAADPANTLPVPVDLVTA 124

Query: 129 SASGLDPQISPAAAEYQAARVARARGLSVAQVRSLIRSNSESPQWGLFGEPRVNVLKLNL 188
           SASGLDP+IS AAA+YQAAR+A AR + + +V+S+I  +S++  +G FGEPRVNVL LNL
Sbjct: 125 SASGLDPEISLAAAKYQAARIALARKMQLEEVQSIIDRHSKAQYFGFFGEPRVNVLALNL 184

Query: 189 ALD 191
           ALD
Sbjct: 185 ALD 187


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 245,976
Number of extensions: 7074
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 126
Effective length of database: 746,632
Effective search space: 94075632
Effective search space used: 94075632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)