BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3688.p (940 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 863 0.0 gi|134093475|ref|YP_001098550.1| putative two-component system s... 101 1e-22 gi|134093575|ref|YP_001098650.1| putative two-component hybrid s... 99 1e-21 gi|134094163|ref|YP_001099238.1| putative two-component histidin... 92 2e-19 gi|134093857|ref|YP_001098932.1| putative two-component system s... 87 4e-18 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/930 (50%), Positives = 618/930 (66%), Gaps = 32/930 (3%) Query: 21 PYMNTRPDPDDLLERVMRDEERQARGRLKIFFGFSAGVGKTFAMLEAAQALGAQGVDVLA 80 P RPDPD LL V E R RG+L+I+FG SAGVGKT+AML AA+ + A+G DV+ Sbjct: 3 PADYQRPDPDALLAHVQEQERRAERGKLRIYFGASAGVGKTYAMLSAARRMQAEGHDVIV 62 Query: 81 GVVETHGRAETEAQLAGIVRLPMRLVPYRNRQLPEFDLDAALERKPGVILVDELAHSNVP 140 G+VETHGR ET A L G+ LP + + YR++ + EFD+DAAL R+P +ILVDELAHSN P Sbjct: 63 GIVETHGRNETAALLDGLEMLPRKEIAYRDKIISEFDIDAALVRRPALILVDELAHSNAP 122 Query: 141 GSRHAKRWQDIDELLRAGIDVYTTLNVQHIESLNDVVGQITGIRVFETVPDHVFDEADDV 200 GSRH KRWQD+ ELL AGIDV+TT+NVQH+E+LNDVVG ITGIRV ET+PD VFD+AD+V Sbjct: 123 GSRHPKRWQDVHELLDAGIDVFTTVNVQHLETLNDVVGGITGIRVAETLPDTVFDQADEV 182 Query: 201 MLVDIPPDELLTRLQQGKVYLPQQAEKAGRNFFRKGNLIALREIALRRTADRVDADMRQY 260 +LVDIP D+LL RL GKVY PQQAE+A RNFFRKGNLIALRE+ALRRTADR+ D++ Y Sbjct: 183 VLVDIPADDLLARLSTGKVYQPQQAERASRNFFRKGNLIALRELALRRTADRIGDDVQAY 242 Query: 261 RADRSIAQLWQARERIVVAVGSGAGEERLIREGARLAAKLQAEWLAVHVDLPRQRQSMN- 319 R ++SI +W+ ++V VG G E +IR A+LA +L A+W AV+V+ P Q QS+ Sbjct: 243 RIEKSINGVWKTDSDLLVCVGPGTNCEHVIRSAAQLAGQLNAKWHAVYVETP-QLQSLPP 301 Query: 320 -ERERVVAYLKLAQSLGAETASISGEQLSAALLQFARSRNAGKLVIGQEEGGLRRLLRWP 378 RE ++ LKLAQ L A TA +SG ++ ++ +ARS N ++V+G++ +WP Sbjct: 302 AHREHILKTLKLAQDLSATTAVLSGNTVANEIVNYARSHNFSRIVLGRDHS------KWP 355 Query: 379 -RGSLSQRIASAGGEIDLYTIARSRTREHQEERSMDSAASAA--EALLTRRRRTRGSLWA 435 + S + IA +IDL I R + +++ + S+ E + R +W Sbjct: 356 WQTSHLKLIAHHLPDIDLIEIGRIEGKGSSSSQNLSARLSSGLDETPGGTKPRFMPYVWT 415 Query: 436 VASCAATTTLAFVLDGKLHPANVIMLYLVGVMLVAMRYGRAASILVSVLSVLSFDFFFVD 495 V +C T LA L L AN++ML+L+ +L+A+R+GR ++L + LSV FDFFFV Sbjct: 416 VVACIFTALLATPLLPHLDLANIVMLFLLAEVLIAVRFGRGPAVLAAFLSVAVFDFFFVL 475 Query: 496 PRFSISVSDAQYLLTLAVMLAVSLFISSLTARLRRQASVAMQREARAANLYMLGKELSAL 555 PRFS +VSD QYL+T +V+L V L + LT+ LR QA +A RE RA LY +ELS+ Sbjct: 476 PRFSFAVSDVQYLVTFSVLLVVGLIVGQLTSGLRFQARIAAHREGRARALYEFARELSSA 535 Query: 556 LTLDQILEIGRRHLAAVFGARIAFFLPDSAEQLRLAEPQADSGGAHV-----LRSVDAGV 610 L +QI EI + + F A+ LPD A +LRL AD G+ + +D GV Sbjct: 536 LQAEQIFEITQSFIQRTFRAKAVLLLPDDAARLRLPAQAADDIGSDAANGKNVAELDIGV 595 Query: 611 AQWVYDNGQPAGKGTATLPSAAALYLPLMATMRTRGVLAFAIEAPSEEERQLAAAQLALP 670 AQW +D PAG GT TLP++ YLPL+A MRTRGVLA P L +P Sbjct: 596 AQWAFDRATPAGMGTDTLPASTYFYLPLVAPMRTRGVLAI---QPGNRRWIL------IP 646 Query: 671 ENRQMLEIFCSQIAMAIERLHYAEVAQDALVTMESERLRNSLLSAISHDLRTPLTSLVGS 730 E R+ L+ F + A+A+ER+HY EVAQDALV MESERLRNSLLSA+SHDLRTPLTSLVG Sbjct: 647 EQRKQLDTFAALAAIALERVHYIEVAQDALVRMESERLRNSLLSALSHDLRTPLTSLVGL 706 Query: 731 AEVLA-GDARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEELT 789 +E L L + +A+ + +++++M L++NLLDMAR+Q+G V N QW EE+ Sbjct: 707 SESLTMSKPPLTSSQQELAQALHDEARRMSNLVSNLLDMARIQSGEVKFNLQWLQFEEVV 766 Query: 790 GSALRLLAKALEGRLVETRIAPDLPLLRVDAVLLERVLANLVENAIKYSPPGSSITIAAH 849 GSALR A+ ++TR+APDLPL+R DAVL+ERVL NL+ENA KY+P GS I IAA Sbjct: 767 GSALRASQSAIAHHEIKTRLAPDLPLVRFDAVLIERVLCNLIENAAKYTPAGSRIVIAAE 826 Query: 850 VEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQ 909 + ++VSV D+G G P + F+KFTRG+ ESATPGVGLGLAICRAI+EAHQ Sbjct: 827 IS----GRFLEVSVYDNGPGLPAGQEEAIFDKFTRGERESATPGVGLGLAICRAIVEAHQ 882 Query: 910 GRIWIAPQEAGQGATVCFTLPVEAQPALPE 939 G I A G GA++ FTLP+ PA+ E Sbjct: 883 GTIRAAHSPDG-GASINFTLPLGTPPAIDE 911 >gi|134093475|ref|YP_001098550.1| putative two-component system sensor histidine kinase [Herminiimonas arsenicoxydans] Length = 799 Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 76/239 (31%), Positives = 114/239 (47%), Gaps = 18/239 (7%) Query: 705 SERLRNSLLSAISHDLRTPLTSLVGSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNN 764 +ER R+ L +SHD+R P S++ E+ + R I + +K +GL +N Sbjct: 567 AERSRDETLRFLSHDMRAPQASILALLELQQESSSALSQQELFTR-IEKACRKTLGLADN 625 Query: 765 LLDMARLQAGVVTLNRQWNALEELTGSALRLLAKALEGRLVETR-------IAPDLPLLR 817 + +AR ++ Q LEE+ + A L ++R IA + Sbjct: 626 FVQLARAES-------QEYRLEEVDFQDMLFDAADEMWSLAKSRHIDLQVDIAEGEYPVN 678 Query: 818 VDAVLLERVLANLVENAIKYSPPGSSITIAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQH 877 VD VL+ R L NL+ NAI YSP + I +A + ++D V ++ DHG G A Sbjct: 679 VDRVLMTRALTNLISNAINYSPDHTKIQCSARAQQLNDQTHVVCNIRDHGYGIAEADQGK 738 Query: 878 AFEKFTRGD--NESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLPVEAQ 934 F++F R D N+ GVGLGL + +IE HQG I + AG+G T TLP+ A Sbjct: 739 LFQRFQRVDLPNQPRHEGVGLGLVFVKTVIERHQGEIRFS-STAGKGTTFTLTLPLAAN 796 >gi|134093575|ref|YP_001098650.1| putative two-component hybrid sensor and regulator [Herminiimonas arsenicoxydans] Length = 468 Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 132/270 (48%), Gaps = 10/270 (3%) Query: 671 ENRQMLEIFCSQIAMAIERLHYAEV-AQDALVTMESERLRNS-LLSAISHDLRTPLTSLV 728 +++Q+LE Q+ A E L A AQD ES R LS ++H+LR+PL + Sbjct: 66 KSKQVLEALVLQLREANENLVLAAFGAQDMQAKAESANHRQEEFLSMLAHELRSPLAPIA 125 Query: 729 GSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGVVTLNRQWNALEEL 788 +A++L + IS Q M L+++LLD +R+ G +TL ++ L E+ Sbjct: 126 MAADLLGKITTAHPMLPKLYGIISRQVGHMAHLVDDLLDASRVSTGNITLQKRSLLLSEI 185 Query: 789 TGSALRLLAKALEGRLVETRIA--PDLPLLRVDAVLLERVLANLVENAIKYSPPGSSITI 846 SA+ + R + I D ++ D V L + ANL+ NA K++P I I Sbjct: 186 IDSAVETSQPFINQRNQQLTITLPEDTVVINGDLVRLAQAFANLIINATKFTPVDGHIDI 245 Query: 847 AAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTRGDN--ESATPGVGLGLAICRAI 904 +A V A VKVS+ D+G G P + F+ F +G + + + G+G+GL++ R + Sbjct: 246 SAQVL----ADVVKVSIKDNGMGIAPDIQPFIFDLFRQGPHSLDRSQGGLGIGLSLVRTV 301 Query: 905 IEAHQGRIWIAPQEAGQGATVCFTLPVEAQ 934 ++ H G + + G G+ LP+ + Sbjct: 302 VQMHGGTVSVYSAGLGCGSEFFVVLPISTE 331 >gi|134094163|ref|YP_001099238.1| putative two-component histidine kinase sensor protein [Herminiimonas arsenicoxydans] Length = 463 Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 15/228 (6%) Query: 711 SLLSAISHDLRTPLTSLVGSAEVLAGD--ARLDDDARAMARTISEQSQKMVGLMNNLLDM 768 S ++SHDLR+PL ++ G + + D RLDD+ R + I S+KM L+++LL Sbjct: 244 SFSYSVSHDLRSPLRAIDGYSRMFEEDFADRLDDEGRRLLSVIRVSSKKMGQLIDDLLAF 303 Query: 769 ARL-QAGVVTLNRQWNALEELTGSALRLLAKALEGRLVETRIAPDLPLLRVDAVLLERVL 827 +R+ + V + NAL + + + + V +LP + D LL +V Sbjct: 304 SRMGRKPVDSAKVDMNALVDEVWTEV-----CASSKTVLPLKKTNLPAVWGDQALLRQVW 358 Query: 828 ANLVENAIKYSPPGSS--ITIAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTRG 885 NL+ NA+KYS + I A + +V +V D+G GF F F R Sbjct: 359 MNLLANAVKYSSKKEEQIVEITAKQSE----HEVVYTVRDNGVGFDMRFYNKLFGVFQRL 414 Query: 886 DNESATPGVGLGLAICRAIIEAHQGRIWIAPQEAGQGATVCFTLPVEA 933 E+ PG G+GLAI + +I H GRIW A + + F+LP EA Sbjct: 415 HTENEFPGTGVGLAIAQRVIVRHGGRIW-AESKPDEYTIFNFSLPKEA 461 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 87.0 bits (214), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/216 (27%), Positives = 112/216 (51%), Gaps = 29/216 (13%) Query: 716 ISHDLRTPLTSLVGSAEVLAGDARLDDDARAMARTISEQSQKMVGLMNNLLDMARLQAGV 775 ++H+ RTP+TSL+G ++V G R D+ + + + E+ +++ +++++L +AR++ Sbjct: 256 LAHEFRTPVTSLLGQSQVALGRPRSADEYKQLVISNMEELERLSRMIDSMLFLARVEREQ 315 Query: 776 VT-----------LNRQWNALEELTGSALRLLAKALEGRLVETRIAPDLPLLRVDAVLLE 824 ++ +R N E+++ +L+ +G ++ DA LL Sbjct: 316 MSVARYPLLVQDEFDRLCNFFEDMSDERGLILSNQGDG------------IVMADAQLLR 363 Query: 825 RVLANLVENAIKYSPPGSSITIAAHVEDIDDAPQVKVSVIDHGRGFPPAMTQHAFEKFTR 884 R L+NL+ NAI+++ GS+I + + E A V +SV + G P H F++F R Sbjct: 364 RALSNLLSNAIRHADKGSTIELRSRQE----AEFVVLSVTNTGATIGPEHMPHLFDRFYR 419 Query: 885 GDN--ESATPGVGLGLAICRAIIEAHQGRIWIAPQE 918 D+ ++ GLGL+I RAI+ H GR + Q+ Sbjct: 420 ADSARTDSSESTGLGLSIVRAIMTLHHGRATVTSQD 455 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,599,012 Number of extensions: 64069 Number of successful extensions: 325 Number of sequences better than 1.0e-08: 20 Number of HSP's gapped: 279 Number of HSP's successfully gapped: 20 Length of query: 940 Length of database: 1,000,347 Length adjustment: 91 Effective length of query: 849 Effective length of database: 700,502 Effective search space: 594726198 Effective search space used: 594726198 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)