BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3687.p (236 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094832|ref|YP_001099907.1| two-component regulatory system... 258 3e-70 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 131 3e-32 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 127 4e-31 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 125 3e-30 gi|134093856|ref|YP_001098931.1| two-component system response r... 125 3e-30 >gi|134094832|ref|YP_001099907.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 232 Score = 258 bits (658), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 125/230 (54%), Positives = 170/230 (73%), Gaps = 2/230 (0%) Query: 1 MQEHAGNIVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLP 60 M+E + +ED+P IR+ V++ALE+EG+ + EA+ + G+ +AGTRKP+LI+LDLGLP Sbjct: 1 MKEALPIALLVEDEPQIRRFVRAALEEEGWQIFEAETMKRGLIDAGTRKPNLIVLDLGLP 60 Query: 61 DADGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 D DG I ++R WS+VPI++LSART ES+K++ALDAGADDYL KPFG+ ELLAR+R+ + Sbjct: 61 DGDGVDFIHDVRKWSTVPIIVLSARTNESDKIKALDAGADDYLSKPFGVGELLARVRSTV 120 Query: 121 RRHARASGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITH 180 RR R Q + ++ G+V +DL A V++ + +HLT EYRLL+ L +AGRV+T+ Sbjct: 121 RRQHRQGSDAQEAIQF--GDVRLDLKAHLVTKGNQMVHLTPTEYRLLAVLATNAGRVVTN 178 Query: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYRV 230 QLL WGPSH+E HYLRIYM LRQKLE D AQP ++LTE VGYR+ Sbjct: 179 PQLLREVWGPSHSESSHYLRIYMGHLRQKLEDDPAQPRYLLTETAVGYRL 228 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 131 bits (330), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 76/226 (33%), Positives = 127/226 (56%), Gaps = 9/226 (3%) Query: 8 IVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQV 67 I+ IED+ I + + LE G+++ A N G A + D +ILD+ LP DG + Sbjct: 3 ILIIEDNADIVANLYAFLEPRGYVLDCAANGYAGFALAAQHEYDAVILDIKLPGIDGLTL 62 Query: 68 ISEIRN--WSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHAR 125 ++R+ + P+++L+AR +KV D+GADDYLVKPF + E+ R++A +R R Sbjct: 63 CRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKPFSLLEVEVRLKALIR---R 119 Query: 126 ASGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLV 185 A G Q + +G+++ D V R+G + LT+ +++LS L+++A +V++ L + Sbjct: 120 ARGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSCLMKEAPKVVSRETLEL 179 Query: 186 AGWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEI-GVGYRV 230 WG H D LR ++ LRQ L D + P +L + G+GYR+ Sbjct: 180 EVWG-DHPPDSDALRTHIHALRQAL--DKSHPFAMLRTVQGIGYRL 222 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 127 bits (320), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 8 IVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQV 67 ++ +ED+ + ++ L + GF V A N +G A T DLIILD+ LPD DG ++ Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGWKI 62 Query: 68 ISEIRN-WSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHARA 126 + +RN ++VP + L+AR +++V+ L+ GADDY+VKPF ELLAR+R LRR + Sbjct: 63 LQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGIPS 122 Query: 127 SGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLLVA 186 R ++ ++V+DL R+ +R G+ L LT E+ LL L+R G V+ + Sbjct: 123 PLV----DRMQVSDLVLDLARRAATRAGKRLTLTNKEFLLLEFLVRHKGEVLPRSLIASQ 178 Query: 187 GWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGY 228 W + D + + + ++RLR K++ D +P I T GVGY Sbjct: 179 IWDINFNSDTNVIDVAIRRLRSKMDDD-YEPKLISTIRGVGY 219 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 125 bits (313), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 129/233 (55%), Gaps = 14/233 (6%) Query: 10 FIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTE----AGTRKPDLIILDLGLPDADGK 65 IEDD + +V + L Q GF V + A EG+ + + +++LDL LPDADG Sbjct: 1 MIEDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGL 60 Query: 66 QVISEIRNW----SSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLR 121 V +IR + +++PIV+L+A+ ++V L+ GADDY+ KPF ELLAR+RA LR Sbjct: 61 DVCRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 122 R-HARASGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITH 180 R H + G R G + +DL AR + + + +T ++ LL+ + AGRV++ Sbjct: 121 RQHTTPATDGHV---LRFGRLEIDLDARMIRLDDQDKPVTSYQFNLLAAMAERAGRVLSR 177 Query: 181 RQLLVAGWG-PSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYRVAE 232 QL+ A G P A D + +++ RLR +E D QP I+T G GY A+ Sbjct: 178 EQLMDAVKGEPLEAFD-RSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVFAK 229 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 125 bits (313), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 128/229 (55%), Gaps = 10/229 (4%) Query: 8 IVFIEDDPHIRKLVKSALEQEGFIVHEAKNAREGVTEAGTRKPDLIILDLGLPDADGKQV 67 I+ IED+P I + L + GF V A+N R+G+ A DLI+LD+ LP G ++ Sbjct: 3 ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWEL 62 Query: 68 ISEIRNWSS---VPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQLRRHA 124 ++ +R+ + +P++ L+AR + ++V+ L+ GADDYL+KPF ELLAR+R LRR Sbjct: 63 LTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRR-- 120 Query: 125 RASGAGQSSGRYRLGEVVVDLPARSVSRNGEALHLTQIEYRLLSTLLRDAGRVITHRQLL 184 + R+G++ +D+ R V RNG+ + LT E+ LL L R V++ + Sbjct: 121 ---SPVRDEDFIRIGDMEIDVMKRKVMRNGKRITLTAKEFGLLHLLARRQSEVLSRSVIA 177 Query: 185 VAGWGPSHAEDGHYLRIYMQRLRQKLEHDAAQPVHILTEIGVGYRVAEV 233 W + D + + ++RLR K++ D + I T+ G+GY V EV Sbjct: 178 SQVWDINFESDTNVIDAAVRRLRSKID-DPFETKLIHTQRGMGY-VCEV 224 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 416,962 Number of extensions: 15969 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 24 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 24 Length of query: 236 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 157 Effective length of database: 740,042 Effective search space: 116186594 Effective search space used: 116186594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)