BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3684.p
         (268 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093431|ref|YP_001098506.1| hypothetical protein HEAR0142 [...   149   1e-37
gi|134094829|ref|YP_001099904.1| signal peptide [Herminiimonas a...   114   6e-27

>gi|134093431|ref|YP_001098506.1| hypothetical protein HEAR0142
           [Herminiimonas arsenicoxydans]
          Length = 244

 Score =  149 bits (377), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/222 (41%), Positives = 127/222 (57%), Gaps = 13/222 (5%)

Query: 27  AQAQESVAAAPAAAAADTSASPLH-LTGNIGVVSQYVFRGTTQTNQKPALQGGFDLNHDN 85
           A A  SV A   A A D    P H  TGN+ + + Y FRG +QT ++P +QGGFD  H +
Sbjct: 7   AAAVMSVFAGSLAHAEDVI--PEHTFTGNVTLATDYRFRGLSQTFKEPTIQGGFDYAHSS 64

Query: 86  GLYAGVWLSNV--SWISDGNPAASASLEADLYGGWKPALNDWLSGDIGVLHYAYPGSYPT 143
           G Y G W SNV  S I++GN      +E DLYGG+K A+   L+GD+GVLHY YPG+   
Sbjct: 65  GFYVGNWNSNVDTSAINNGN------IEMDLYGGYKFAIAPDLTGDVGVLHYYYPGAETA 118

Query: 144 NMTKPDTTELYLGVDAKWIAFKYSYSTGDTFGNAGTSGTTYADLSVNHELFAGINGLAHI 203
                +TTE+Y+G   KW + KYS++  D FG   + G+ Y DL    E+        H+
Sbjct: 119 AGKSINTTEVYVGATYKWFSAKYSHAVSDFFGVDNSKGSGYLDLGAAFEVAEKTTLSFHV 178

Query: 204 GRQHYTGPNASSLSYTDWKLGLSRDYSGYVLGLAYTGSNAPN 245
           GRQ     +AS   YTD+K+G++RD+    + LA  G+NA +
Sbjct: 179 GRQKVRHNSAS--DYTDYKVGIARDFGFATISLAAIGTNAKD 218


>gi|134094829|ref|YP_001099904.1| signal peptide [Herminiimonas
           arsenicoxydans]
          Length = 250

 Score =  114 bits (285), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 19/240 (7%)

Query: 40  AAADTSASPLHLTGNIGVVSQYVFRGTTQTNQKPALQGGFDLNHD-NGLYAGVWLSNVSW 98
           A A+       ++ N  V S Y +RG +QT  + ALQGG D  H+ +G YAG WLS + +
Sbjct: 19  AHAEEQKPEQEVSFNAAVTSDYRYRGISQTRLQAALQGGADYVHNPSGFYAGTWLSTLKF 78

Query: 99  ISDGNPAASASLEADLYGGWKPALNDWLSGDIGVLHYAYPGSYPTNMTKP--DTTELY-- 154
           + D     +  +E D+YGG + A+   +S D+G L Y     YP+N   P  +TTE+Y  
Sbjct: 79  VKD--AGGNGDVEVDIYGGKRGAITSDVSYDVGALSYV----YPSNGLNPSTNTTEIYGQ 132

Query: 155 LGVDAKWIAFKYSYSTGDTFGNAGTSGTTYADLSVNHELFAGINGLAHIGRQHYTGPNA- 213
           LG    +I  KYS+S  + FG   +  + Y D+  N +L  G     H G Q  +G N  
Sbjct: 133 LGYGPAYI--KYSHSVTNLFGYLDSKNSAYLDIGANLDLVDGYILNLHAGHQKVSGTNGG 190

Query: 214 ---SSLSYTDWKLGLSRDYSGYVLGLAYTGSNAPNAGYI--IRGKNIGGNQWVASINKSF 268
              S  +YTDWK+G+++D+      LA  G++A  + Y      K +G    V +++K+F
Sbjct: 191 VSNSRFNYTDWKVGVTKDFGIVTGALAVVGTDADKSAYASPANAKFMGKTGLVLTVSKTF 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 529,446
Number of extensions: 24495
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 188
Effective length of database: 736,747
Effective search space: 138508436
Effective search space used: 138508436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)