BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3677.p (254 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg... 73 1e-14 gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg... 60 1e-10 gi|134094411|ref|YP_001099486.1| GntR family transcriptional reg... 60 1e-10 gi|134093377|ref|YP_001098452.1| GntR family transcriptional reg... 55 2e-09 >gi|134094688|ref|YP_001099763.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 73.2 bits (178), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 92/184 (50%), Gaps = 11/184 (5%) Query: 51 RLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVASPTPEEARNIFA 110 +L PG L E +LA FGV+RT +RE L +LA G+I+ P RGA VA P++ +F Sbjct: 20 KLPPGHHLDETELAKEFGVSRTPIREALIQLASMGIIVIRPRRGAIVAEIGPQQLIEMFE 79 Query: 111 ARRLLEPALLRHLCEHTRPEHIALLRA-HVA-EEAQARADNDRRAIIRLSGEFHIRIADM 168 LE R P A L+A H+A EEA+ AD+D A + EFH +I Sbjct: 80 VMAELEAMCARLAARRMSPAGHATLKATHLACEEARDSADSD--AYFYKNEEFHQQIYIG 137 Query: 169 VDNPVMSK----MMRELASLTCLIIVLYDSPTVPACTHDDHGHIIDAISEGRTEDAIATM 224 N + + + R L L + + + + D+HG ++DAI EG+ E A + Sbjct: 138 SQNSFLEEQARVLQRRLRPYRRLQLRVRNRVQ---ASFDEHGAVVDAIIEGKGELAAELL 194 Query: 225 LEHL 228 +H+ Sbjct: 195 RQHI 198 >gi|134095895|ref|YP_001100970.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 247 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 4/143 (2%) Query: 37 DAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAF 96 DA+ E + I+E L PG KL E ++ G++RT +RE + LA EGLI PNRGAF Sbjct: 26 DAVVEHLQNLIIEGVLAPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIAPNRGAF 85 Query: 97 VASPTPEEARNIFAARRLLEPALLRHLCEHTRPEHIALLRAHVAEEAQ--ARADNDRRAI 154 V+ E F LE E P IA ++ V EA RA ND Sbjct: 86 VSKMNDNEIWEAFEMMSGLEALSGELAAERISPAEIADIK--VLHEAMLVCRAQNDLPGY 143 Query: 155 IRLSGEFHIRIADMVDNPVMSKM 177 + H +I + N ++ ++ Sbjct: 144 YSRNQTIHNKINEAARNSMLRQI 166 >gi|134094411|ref|YP_001099486.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 248 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 11/207 (5%) Query: 32 RPLAGDAIYERIVGAIMEHRLTPGTKLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIP 91 +P D YE++ AI+ R+ PG+ + E L+ +F + RT +RE + RLA E L++ +P Sbjct: 36 KPKLTDLAYEQLEEAIITLRIPPGSVISELTLSEMFNIGRTPIREAIQRLAREHLLLVLP 95 Query: 92 NRGAFVASPTPEEARNIFAARRLLEPALLRHLCEHTRP-EHIALLRAHVAEEAQARADND 150 RG V ++ + RR +E + + P E R H E A + ND Sbjct: 96 QRGVMVPEVDLKKQLKLLETRREVERLICKSAARRATPAEREVFARLH-DEFMHASSTND 154 Query: 151 RRAIIRLSGEFHIRIADMVDNPVMSKMMRELASLTCLIIVLY-----DSPTVPACTHDDH 205 A +R EF+ N MR + L+ + D P V H Sbjct: 155 DVAFMRSDREFNDLSLIAARNEFSEGAMRLMHDLSRRFWYFHYKQAADLPEVARL----H 210 Query: 206 GHIIDAISEGRTEDAIATMLEHLHHIE 232 H+ AIS G A + L +IE Sbjct: 211 AHVAGAISRGNVAAAGEGLDRLLDNIE 237 >gi|134093377|ref|YP_001098452.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 249 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 16/171 (9%) Query: 3 TSTASSTRKKHNKHENPDNSPLPGQAFSVRPLA------GDAIYERIVGAIMEHRLTPGT 56 TST + RK + + P +++ +A D YE+I AI+ R+ PG+ Sbjct: 2 TSTPKAVRKPRAAAKQSKTARAPAVKKTMQDMAEPKVKLTDIAYEQIEEAIITLRIPPGS 61 Query: 57 KLVEEKLAGIFGVNRTRVREVLARLAHEGLIITIPNRGAFVASPTPEEARNIFAARRLLE 116 + E L+ + + RT +RE + RLA E L++ +P RG + ++ + RR +E Sbjct: 62 VVSELTLSEMLNIGRTPIREAIQRLAREHLLLVLPQRGLLIPEIDLKKQLKLLETRREVE 121 Query: 117 PALLRHLCEH-----TRPEHIALLRAHVAEEAQARADNDRRAIIRLSGEFH 162 R +C+ T E A R H E A + ND + +R EF+ Sbjct: 122 ----RLICKSAARRATEEERAAFARLH-DEFMHASSTNDDVSFMRSDREFN 167 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 434,452 Number of extensions: 15481 Number of successful extensions: 60 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 59 Number of HSP's successfully gapped: 4 Length of query: 254 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 174 Effective length of database: 736,747 Effective search space: 128193978 Effective search space used: 128193978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)