BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3674.p (263 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 183 7e-48 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 178 3e-46 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 170 7e-44 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 169 1e-43 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 137 5e-34 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 183 bits (465), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 146/234 (62%), Gaps = 12/234 (5%) Query: 24 AIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTSGEVRVAGRAITGPGADRGMV 83 A+ ++L + K EF+ L+G SGCGKSTLLN+IAG T G + R I GP +R +V Sbjct: 27 ALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAGPSPERAVV 86 Query: 84 FQQANLMPWLPVWDNVAFSL-----KLQGKSAAQRRAAAQPFIETVKLKGFENHYPSELS 138 FQ +L+PWL ++NV ++ K++GK A+ RA + + V L E P+E+S Sbjct: 87 FQNHSLLPWLTCYENVYLAVERVFGKVEGK--AKLRARTRAALSLVGLTHAEQKRPNEIS 144 Query: 139 GGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALWQRYEGTIVFVTHSVD 198 GGM QRVGIARAL P V+LMDEPF ALDA T+ +Q+EL+ + T+V VTH VD Sbjct: 145 GGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVD 204 Query: 199 EALILATKVAVMTHRP-GHMRELIDIDLARPRDTTT----PEFNQYKRHVLSLI 247 EA++L+ K+ ++T+ P + E++++ LA PR+ ++++Y+ VL + Sbjct: 205 EAVLLSDKIVMLTNGPSATIGEILEVKLAHPRERVALAKDAQYSEYRTAVLEFL 258 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 178 bits (451), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 91/195 (46%), Positives = 124/195 (63%), Gaps = 8/195 (4%) Query: 28 VSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTSGEVRVAGRAITGPGADRGMVFQQA 87 V ++ K + LLGPSGCGKSTLL + G+ PT GE+R+ + IT P DR MVFQ+ Sbjct: 31 VDFKVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTEGEMRLHDKVITKPWYDRMMVFQEF 90 Query: 88 N-LMPWLPVWDNVAFSL----KLQGKSAAQRRAAAQPFIETVKLKGFENHYPSELSGGMA 142 + L PW V NV F L KL+GK A + A +IE V L F +HYP LSGGM Sbjct: 91 DQLPPWKTVKQNVMFPLLASGKLKGKEAEDK---AMYYIEKVNLSKFADHYPHMLSGGMK 147 Query: 143 QRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVALWQRYEGTIVFVTHSVDEALI 202 QRV IAR + P ++LMDEP+AALDA T+ +MQ+EL+ LW T++FVTHS+ EA+ Sbjct: 148 QRVAIARGMAMEPDILLMDEPYAALDALTRKKMQDELLQLWDDTHFTVLFVTHSIAEAVK 207 Query: 203 LATKVAVMTHRPGHM 217 + ++ +++ PG + Sbjct: 208 IGNRILLLSPHPGQV 222 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 170 bits (430), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 140/248 (56%), Gaps = 4/248 (1%) Query: 3 FIELNDIVKVFKDRKRGTDMLAIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPT 62 IEL + K FK GT +++V+ L + E + LLG SG GKSTLL ++AG Sbjct: 6 LIELKGVAKSFKTAD-GTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAAD 64 Query: 63 SGEVRVAGRAITGPGADRGMVFQQANLMPWLPVWDNVAFSLKLQGKSAAQRRAAAQPFIE 122 G + G+ I P + MVFQ L PWL V NV L+ QG + +R A ++ Sbjct: 65 QGTAKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLD 124 Query: 123 TVKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVAL 182 + L GF P ELSGGM QRVGIAR L+ P V+LMDE F+ALD T ++++++ + Sbjct: 125 LIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEM 184 Query: 183 WQRYE---GTIVFVTHSVDEALILATKVAVMTHRPGHMRELIDIDLARPRDTTTPEFNQY 239 W+ I+ V+H+++EA+++A ++ V++ PG +R I I+L RPR+ + E Sbjct: 185 WEEKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSVEIRAL 244 Query: 240 KRHVLSLI 247 V +L+ Sbjct: 245 IDEVYALM 252 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 169 bits (428), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 94/223 (42%), Positives = 136/223 (60%), Gaps = 11/223 (4%) Query: 1 MAFIELNDIVKVFKDRKRGTDMLAIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEF 60 MA +E+ ++ + F D +D++SL +E EF LLGPSGCGK+TLL MIAGF+ Sbjct: 1 MALLEIRNLTRRFGDNT------VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDE 54 Query: 61 PTSGEVRVAGRAITG-PGADRGM--VFQQANLMPWLPVWDNVAFSLKLQGKSAAQRRAAA 117 P +G++ + G +TG P R + VFQ L P + V N+AF L++ ++ + Sbjct: 55 PDAGKILLDGVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKV 114 Query: 118 QPFIETVKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQE 177 +E V+L GF YP ELSGG QRV IARAL+ P ++L+DEP +ALDAQ + +MQ Sbjct: 115 DEALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQI 174 Query: 178 ELVALWQRYEGTIVFVTHSVDEALILATKVAVMTHRPGHMREL 220 EL+ L + T V+VTH EAL L+ ++AVM G++ +L Sbjct: 175 ELINLQKEVGITFVYVTHDQAEALALSHRIAVMNK--GNIEQL 215 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 137 bits (345), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 125/226 (55%), Gaps = 19/226 (8%) Query: 4 IELNDIVKVFKDRKRGTDMLAIDHVSLQLEKKEFLCLLGPSGCGKSTLLNMIAGFEFPTS 63 IE+ +I K F + +A++ VSL+ E LLGPSGCGK+TLL +IAG E P Sbjct: 3 IEVKNINKKF------GNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDH 56 Query: 64 GEVRVAGRAITGPGADR---GMVFQQANLMPWLPVWDNVAFSLKLQGKSAAQR------R 114 G+V + G + G VFQ L + V++N+AF L++ + AA R + Sbjct: 57 GQVLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRV--RPAATRPSESVIK 114 Query: 115 AAAQPFIETVKLKGFENHYPSELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKME 174 +E V+L + YP +LSGG QR+ +ARAL P V+L+DEPF ALDA+ + E Sbjct: 115 EKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 175 MQEELVALWQRYEGTIVFVTHSVDEALILATKVAVMTHRPGHMREL 220 ++ L L T +FVTH +EAL +A ++ +M GH+ ++ Sbjct: 175 LRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNK--GHVEQI 218 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 465,717 Number of extensions: 18006 Number of successful extensions: 218 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 169 Number of HSP's successfully gapped: 45 Length of query: 263 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 183 Effective length of database: 736,747 Effective search space: 134824701 Effective search space used: 134824701 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)