BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3672.p
         (474 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095900|ref|YP_001100975.1| aspartate carbamoyltransferase,...    73   3e-14

>gi|134095900|ref|YP_001100975.1| aspartate carbamoyltransferase,
           non-catalytic subunit [Herminiimonas arsenicoxydans]
          Length = 354

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 121/295 (41%), Gaps = 32/295 (10%)

Query: 165 DRQILDLLALARREGALVMVHAENADCIGWLTEQ--------LEEAGLTAPKYHAHSRPM 216
           D+ ILD   L R      M +A+  D   WL  Q        +  +G  A +      P+
Sbjct: 76  DQPILDTTVLLR-----AMQYAKTFDYTVWLRPQDPHLGRKGVAHSGPVASRLGLSGVPV 130

Query: 217 MVEREATHRAIALSELVDVPILIVHVSGREAIEQIRWAHGHGLRIHAETCPQYLVLTADH 276
           M E  A H  + L  +    + +  +S    +E +R A   GL I  +    ++ LT + 
Sbjct: 131 MAETIALHTILELVRVTGTRVHLCRMSSAAGLELVRAAKQEGLPISCDVGAHHIHLTEN- 189

Query: 277 LDDGYHGAKCVCSPPPRDKANQQYVWDGLASGLFTVFSSDHAPFRYEDAQGKKPGGREVP 336
            D G+  +    +PP R + ++  +   L  G      SDH P   ++        + +P
Sbjct: 190 -DIGFFDSNARLTPPLRSQRDRDAIHRALLDGTIDAICSDHTPVDDDE--------KLLP 240

Query: 337 FRYIPNGTPGLETRLPILFSEGVGKGRID-------LNRFVALTATDPAKMYGLYPRKGT 389
           F     G  GLE  L +          +D       L + +A  + D A++ GL    G 
Sbjct: 241 FGEASPGATGLELLLSLALKWAENCADLDKQSSQQSLVQAIAKISADAARVVGL--PSGQ 298

Query: 390 IAIGSDADIAIWDPHRAVTVRNEMLHHDVDYTPYEGMELTGWPVLTLSRGEIVWN 444
           +A+GS ADI ++DP    TV  + L     +TP+ G EL+G    T+  G I + 
Sbjct: 299 LALGSVADICLFDPAARWTVAAKALASQGKHTPFLGYELSGQVKTTIVAGHIAYQ 353


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,014,642
Number of extensions: 45703
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 389
Effective length of database: 720,272
Effective search space: 280185808
Effective search space used: 280185808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)