BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3670.p (301 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093609|ref|YP_001098684.1| putative transcriptional regula... 190 6e-50 gi|134094015|ref|YP_001099090.1| LysR family transcriptional reg... 181 3e-47 gi|134095507|ref|YP_001100582.1| putative transcriptional regula... 152 2e-38 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 129 2e-31 gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herm... 97 1e-21 >gi|134093609|ref|YP_001098684.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 301 Score = 190 bits (483), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 96/262 (36%), Positives = 151/262 (57%), Gaps = 1/262 (0%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M +L+ + FV A ++ S +AAA VTP + + LE LG RLL RSTR L LT Sbjct: 1 MDKLKQIEAFVMAVEHSSFAAAALALQVTPVMVGRRIDALEKRLGVRLLHRSTRRLALTE 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 +G YL++ R +L+E++ ++ G V G L +S P+ FGR + + F QHP Sbjct: 61 EGSVYLEHCRKMLSELDQAESTLSAGHNKVSGHLIISAPASFGRQHVAPYAQNFLEQHPG 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 + + ++DRV D+ ++ ++ IR D + VA+ LA N+RV+C +PDY +HG+P+ Sbjct: 121 LKMSFNLTDRVVDLVQEGYDMGIRIGGTIDPNFVAIKLAA-NKRVVCGTPDYFKKHGKPK 179 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 + DL +HNCL + L W F G + ++ G C+DGEL+HRW +G GIA+ Sbjct: 180 TLDDLAKHNCLAFNLQGGQQRGWYFNHRGKTVSVRAQGSLDCNDGELLHRWMSEGLGIAW 239 Query: 241 KSRLDVLADLRNGRLEALLPDY 262 +S ++ + L +G LE +L D+ Sbjct: 240 RSVWEIQSQLESGTLETVLDDF 261 >gi|134094015|ref|YP_001099090.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 305 Score = 181 bits (460), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 159/301 (52%), Gaps = 1/301 (0%) Query: 1 MIRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTP 60 M + DL F GSL+AAA++ VTP S + +E L RLL R+TR + LTP Sbjct: 1 MDGISDLAFFALLVKRGSLAAAAQELGVTPPSVSKRLAGIEARLRVRLLNRTTRRISLTP 60 Query: 61 DGERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPA 120 +GE YL ++AE+ A ++ G G L +S FGR + L F +P Sbjct: 61 EGEIYLADGARLVAELEALEQRISGGNVTAKGLLKISATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPR 180 V++Q+ ++DR ++ Q + IR+ D+ L A +A DNRR++CASP YL HG P Sbjct: 121 VDVQLHLTDRPVNLVEQGFDADIRFGQLPDARLTARKIA-DNRRLVCASPAYLKNHGIPL 179 Query: 181 SPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAY 240 +P DL++HNC+ SD ++ W F ++V G +DGE WA+DG+GI Sbjct: 180 TPRDLQKHNCILLRESDEIYGSWHFSSGTKQETVKVRGSLSANDGECATAWALDGQGIVV 239 Query: 241 KSRLDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGERIGRYLTD 300 +S DV LR+GRL +L D+ + + +V + LS RAL + + + + TD Sbjct: 240 RSEWDVAPYLRSGRLRTVLEDWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFESHRTD 299 Query: 301 R 301 R Sbjct: 300 R 300 >gi|134095507|ref|YP_001100582.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 146/284 (51%), Gaps = 2/284 (0%) Query: 7 LTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDGERYL 66 + FV + S +AA + D++ A+ S + LE LG RLL R+TR L LT G Y Sbjct: 1 MKTFVAVVEAESFTAAGARLDISKALVSKYVGILEDHLGTRLLNRTTRRLSLTESGLAYY 60 Query: 67 QYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPAVNLQVR 126 + +LA+V+ A + GTL +++P FG + L E+ ++P V L + Sbjct: 61 ERCLQILADVDEAEQVAAQSAAMPRGTLKVAMPVSFGTVRIAPLLTEYMRRYPEVRLDIA 120 Query: 127 ISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPRSPADLR 186 ++DR D+ ++AIR +S L+A LA D R VLCASP YL HG P++P DL+ Sbjct: 121 LADRRVDLIEDGYDLAIRVGNLPESGLIARKLATD-RIVLCASPAYLQVHGAPQTPEDLK 179 Query: 187 QHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIAYKSRLDV 246 QH CL Y S + +W F K T ++V G ++G+++ A+DG G+ ++ V Sbjct: 180 QHACLNYSYSSS-GDEWVFGKGKTRAAVRVDGPMRANNGDMLRLAALDGAGLIWQPHFIV 238 Query: 247 LADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELL 290 D++ GRL L+ D + + R LS VR + L Sbjct: 239 ADDVQAGRLVELMKDESDTELGIYAIYPSRKHLSAKVRTFVDYL 282 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/298 (31%), Positives = 151/298 (50%), Gaps = 12/298 (4%) Query: 2 IRLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPD 61 I +DL FV D+G+L AAA+ T + S + RLE +L LL R+TR + LT + Sbjct: 3 INSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDE 62 Query: 62 GERYLQYARNVLAEVNAGRDAVAHGRRVVGGTLSLSVPSDFGRNLMCQWLDEFQAQHPAV 121 G +L+ AR +LA ++ +A+ R+ G L + + F + + + EF+A +P + Sbjct: 63 GRLFLKKARAILAAMDEAEEAIRVRRQQPSGRLRIDAAAPFILHAIVPHVAEFRALYPQI 122 Query: 122 NLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHGRPRS 181 L++ +D+VAD+ ++AIR +DS+L A AL N L ASPDYL RHG P + Sbjct: 123 TLELTSNDQVADLLEHRTDIAIRIGNLQDSTLHARALTA-NPLHLLASPDYLQRHGMPTT 181 Query: 182 PADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRGIA-- 239 P L H L +L ++ ++ W G + V+ GE + A+ G+GIA Sbjct: 182 PEQLAGHQLLGFLQFESGNT-WPIRHAGGE-GLTVTPALFASSGETLRALALHGQGIASL 239 Query: 240 --YKSRLDVLADLRNGRLEALLPD-YVGEASPLNLVCTHRMSLSPTVRALRELLGERI 294 Y +R D+ A GRL +L + Y G ++ V LS + E L +++ Sbjct: 240 ADYMTRDDIAA----GRLVRILENYYTGYRQQIHAVYYRNTQLSRRISCFLEFLQQKL 293 >gi|134094407|ref|YP_001099482.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 304 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 15/303 (4%) Query: 3 RLEDLTIFVCAADNGSLSAAARQHDVTPAVASAAMKRLEGELGARLLARSTRSLRLTPDG 62 RLE L +F AAD S AA + +P + A+K LE +G L R+TR +++T G Sbjct: 4 RLEMLRLFCAAADASSFKEAAARLGTSPQAITRAVKELEEAVGELLFHRNTRGIQITEFG 63 Query: 63 ERYLQYARNVLAEVNAGRDAVAHGRRVVG-----GTLSLSVPSDFGRNLMCQWLDEFQAQ 117 + ++AR E+ G D + H + G + ++ PS GR + + L Q Sbjct: 64 TQLAEHAR----EMVTGVDKLFHHTNPLSDTNLEGLVRITAPSPIGRRHLLKLLLPLIRQ 119 Query: 118 HPAVNLQVRISDRVADMFRQPVEVAIRYSPPEDSSLVALALAPDNRRVLCASPDYLARHG 177 +P + L++ +++ +AD+ + +++ +R P DS LVA ++ + V+ A+P+ +A G Sbjct: 120 YPGIKLELGVTNLLADVVDKKIDIGVRIGPLRDSRLVARSVGKVSFFVV-ATPELVATRG 178 Query: 178 RPRSPADLRQHNCLRYLLSDTLHSQWTFFKDGTPLQMQVSGDRVCDDGELVHRWAVDGRG 237 +P +P DL + +T +F D PL + S V DD E+ + G G Sbjct: 179 KPITPQDLLGLPTTALMDGNTGRIWPWYFADSQPLTL-TSPTLVSDDPEVECDAVLAGIG 237 Query: 238 IAYKSRLDVLADLRNGRLEALLPDYVGEASPLNLVCTHRMSLSPTVRALRELLGERIGRY 297 S +R+GRL +L DY + P +L +R P +R L+ +RI Sbjct: 238 YGQLSNHQAEPHIRSGRLVTVLDDY--QPVPWDLYV-YRPQRGPVPARIR-LVFDRIVEI 293 Query: 298 LTD 300 L+D Sbjct: 294 LSD 296 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 583,657 Number of extensions: 23952 Number of successful extensions: 88 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 13 Length of query: 301 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 220 Effective length of database: 733,452 Effective search space: 161359440 Effective search space used: 161359440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)