BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3668.p
         (276 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094060|ref|YP_001099135.1| IclR family transcriptional reg...    65   3e-12

>gi|134094060|ref|YP_001099135.1| IclR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 245

 Score = 65.5 bits (158), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 62  TGLSRTAARRYLLTLEHLGYL-HSEGKTFALTPRVLKVG---WSYFDSAPLPRILQPHLQ 117
           TGL  + A R L  L    ++  SE   + L  R+L++G    S          L  HL 
Sbjct: 24  TGLHPSTAHRILNDLVLKRFVDRSEPGAYRLGMRLLELGNIVKSRLSVREAALDLMRHLH 83

Query: 118 QITGQTGEAVYASVLDGWELVFIARNGATRV-MTTGFVLGARVPAQLASPGIVMLGALPE 176
           + T QT   V  SV    E+++I R  + R  M     +G R P  L S G + L     
Sbjct: 84  RKTNQT---VNLSVRQNDEIIYIDRAFSERSGMQVVRAIGGRAPLHLTSTGKLFLSIDEP 140

Query: 177 QQVRAWLATCAMTPFTPHTITDPNRLYELIAQARQQGYALVEQQLQTGVRGIAVPLKNRH 236
           + V+A+     +     ++ITD NRL   ++  R  GYA   ++L+ GVR +A  + +  
Sbjct: 141 KMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYARDNEELELGVRCMAAGIHDDT 200

Query: 237 AKVIGALSLSFP 248
            K+I  LS+S P
Sbjct: 201 GKLIAGLSISAP 212


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 484,196
Number of extensions: 18799
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 2
Length of query: 276
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 196
Effective length of database: 736,747
Effective search space: 144402412
Effective search space used: 144402412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)