BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3667.p
         (260 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094060|ref|YP_001099135.1| IclR family transcriptional reg...    83   1e-17

>gi|134094060|ref|YP_001099135.1| IclR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 245

 Score = 83.2 bits (204), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 19/233 (8%)

Query: 37  LTASEVAERVGLTRSAARRYLLTLV-HTGMAASDGKKFWLMPRLLNLGQSYLESARVPRA 95
           ++  E++   GL  S A R L  LV    +  S+   + L  RLL LG        V  A
Sbjct: 15  VSLKELSRVTGLHPSTAHRILNDLVLKRFVDRSEPGAYRLGMRLLELGNIVKSRLSVREA 74

Query: 96  VVPFLQRLTQQLQESTNFSLLDGDEIVYVTRV----TAAQLVNAGFEPGTRLPAYTTTAG 151
            +  ++ L ++  ++ N S+   DEI+Y+ R     +  Q+V A    G R P + T+ G
Sbjct: 75  ALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRA---IGGRAPLHLTSTG 131

Query: 152 RVLLGMREDAEIQAYLERVTLIPHTHMAMTDKAALFQEILTMRKQGYGITENQFEMGMRG 211
           ++ L + E   +QAY  R  L+ H   ++TD   L  E+  +R  GY     + E+G+R 
Sbjct: 132 KLFLSIDEPKMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYARDNEELELGVRC 191

Query: 212 IAIPVKNRSGRVIGALSVTS-----------NLAACSREEALARGLPALQTTA 253
           +A  + + +G++I  LS+++           +L   +RE ++A G    +T A
Sbjct: 192 MAAGIHDDTGKLIAGLSISAPADRLQEEWLEDLMRTAREISVALGYSGNETNA 244


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 453,012
Number of extensions: 17221
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 180
Effective length of database: 736,747
Effective search space: 132614460
Effective search space used: 132614460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)