BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3665.p
         (281 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095916|ref|YP_001100991.1| dehydroshikimate reductase [Her...    65   5e-12

>gi|134095916|ref|YP_001100991.1| dehydroshikimate reductase
           [Herminiimonas arsenicoxydans]
          Length = 273

 Score = 64.7 bits (156), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 21/273 (7%)

Query: 4   ITGTTRIFPVIGWPVEQVKAPTLFNAYFKHHDLDARVIPFKIEPQRYCEAVRMFMKTENV 63
           ++  T  + VIG P+   K+P +   +      D R  P       +   V+ F++  N 
Sbjct: 1   MSTMTDRYAVIGNPIAHSKSPDIHARFAAQTQQDMRYEPLLAPLDGFLATVQDFVR--NG 58

Query: 64  G-GIFVSIPHKPMTLEAVEQATL---RARVAGACNAVYRDAQGVIWGDLIDGEGFIRALA 119
           G G+ V++P K   LEA   AT    RAR AGA N +  D   ++ GD  DG G +  + 
Sbjct: 59  GKGVNVTVPFK---LEAYALATTLTERARAAGAVNTLKFDGADML-GDNTDGFGLVSDIV 114

Query: 120 RTAGEQPLVWHRTRALVVGTGGVGCAIVASLAAQGVAEISVFDTNRAGAEAL-LARVAAA 178
           R A  +  + +++  L++G GG    ++  L  +  A + +   NR  ++AL LA   AA
Sbjct: 115 RNAKVE--IANKS-VLLLGAGGAARGVLLPLLHEQPARLVL--ANRTHSKALDLAHRFAA 169

Query: 179 FPATRVR-FAQPDASGFDLLVNCTPLGMHVGDPMPFALEGVNRQAIVADCGMKIEMSQLL 237
            P  +V  FA  D S FD+++N T   +    P P +        +  D     + +  +
Sbjct: 170 QPRLKVSTFADLDDS-FDIVINATAASLASEVP-PISPRVFTAHTLAYDMMYGAQPTAFM 227

Query: 238 VQAQAQGCRIQKGKEMLIEQAPLYLELFGWPGV 270
             A   G  ++ G  ML+EQA     L  W GV
Sbjct: 228 RFAAQHGATVRDGLGMLVEQAAESFYL--WRGV 258


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 482,214
Number of extensions: 17751
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 200
Effective length of database: 733,452
Effective search space: 146690400
Effective search space used: 146690400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)