BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3663.p
         (380 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr...    94   1e-20
gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a...    88   9e-19

>gi|134095723|ref|YP_001100798.1| putative porin transmembrane
           protein [Herminiimonas arsenicoxydans]
          Length = 392

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/211 (34%), Positives = 100/211 (47%), Gaps = 11/211 (5%)

Query: 30  VTLYGTVDQYLGYMRSSSGKSLWALNDGAILRSRIGLKGYEDLGAGYAATFTLENGFSGD 89
           VT+YG  D  + Y  +  G S   +  G +  SRIG KG EDLG G  A F LE+GF+ D
Sbjct: 29  VTIYGIADVAMVYSSNQGGASNTYMRSGNLAGSRIGFKGTEDLGGGTQAIFQLESGFNLD 88

Query: 90  TGGLADSSRLFDRQSWVGIKTPAAGEFRIGRQNSVPFFIGGAIDYTERTT-----YGSII 144
           TG ++ SS LF+RQ++VGI     G    GRQ +  +   G I  T   T     +   I
Sbjct: 89  TGEMSSSSTLFNRQAFVGINNTRYGALTAGRQYTPYYLFVGPIGPTNSLTGATGAHPGDI 148

Query: 145 NTFGVPSRFDNDLSWKSPRWAGIQFDLHYAMPETAGE-GLGRRGVYQLGVDYTSGPYRAG 203
           +      R +N +++ SP W G+Q        ETAG+ G GR     +  D  +  +  G
Sbjct: 149 DGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDMGSGRTISAAIKYDINNWNFALG 208

Query: 204 YAGLMAKPNAGGRYDNTVQYHNVYADYDYGP 234
           Y  L    N GG     V   N  A+++  P
Sbjct: 209 YQRLNNSNNPGG-----VWSPNASANFNTSP 234


>gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas
           arsenicoxydans]
          Length = 357

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 155/369 (42%), Gaps = 66/369 (17%)

Query: 7   RTPVAMGLLLAASGTALAQSASNVTLYGTVDQYLGYMRSSSGKS--LWALNDGAILRSRI 64
           ++ +A+ +L A +G A AQS+  VT+YG VD  +    + +G +  L  +  G    SRI
Sbjct: 3   KSLLALAVLGAFAGAASAQSS--VTVYGIVDMGITSQDTGAGANDRLNGVTSGNQSASRI 60

Query: 65  GLKGYEDLGAGYAATFTLENGFSGDTGGLA--DSSRLFDRQSWVGIKTPAAGEFRIGRQN 122
           G KG EDLG G  A F LE   + DTG L+  D    F+R + VG+ +   G   +GRQ 
Sbjct: 61  GFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGL-SGNFGAVNLGRQV 119

Query: 123 SV---------PFFIGGAIDYTERTTYGSIINTFGVPSRFDNDLSWKSPRWAGIQFDLHY 173
           S          PF  GG I       + + +   G   R  N + + S  ++G +F  HY
Sbjct: 120 SAIKDAYDAIDPFGDGGTIAPISAIFFNAALK--GDNGRISNSIKYTSNSYSGFKFGAHY 177

Query: 174 AMPETAGEGLGRRGVYQLGVDYTSGP------YRAGYAGLMAKPNAGGRYDNTVQYHNVY 227
           A  E AG   G    Y L + Y +GP      Y +G       P      ++  +   + 
Sbjct: 178 AFGEQAGR-TGADSNYGLNLGYANGPLNVQFGYMSGDDSTAGAPGFKPVKNSKDKMTFLG 236

Query: 228 ADYDYGPGKIYLAYVRSNNTTANANGNNAATILNNVSNPNNFFAGNDPNIQRFYNVYQIS 287
           A YD+G  K++ AY  S N                        AGN  N  R        
Sbjct: 237 ATYDFGVAKLHAAYGDSKNQPV---------------------AGNVDNKYR-------- 267

Query: 288 ADYRLTPQLRIGALYGVM----VDTSHKEGGAQGGN-------IGAYYDLSKRTTLYGFA 336
            +Y L    ++GA   +M    V+ +   GG +  +       I   +DLSKRT LY   
Sbjct: 268 -NYMLGVSAKVGAAGSIMASYTVNDTRTFGGVKANDRDSKRAGIMYAHDLSKRTNLYAGY 326

Query: 337 NYMKNQANA 345
           ++  N  NA
Sbjct: 327 SHTSNDKNA 335


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 764,994
Number of extensions: 33965
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 4
Length of query: 380
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 297
Effective length of database: 726,862
Effective search space: 215878014
Effective search space used: 215878014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)