BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3660.p
         (131 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094525|ref|YP_001099600.1| chemotactic response regulator ...    64   3e-12
gi|134094133|ref|YP_001099208.1| putative response regulator rec...    55   9e-10
gi|134095910|ref|YP_001100985.1| twitching motility protein [Her...    55   1e-09
gi|134093856|ref|YP_001098931.1| two-component system response r...    55   2e-09
gi|134095906|ref|YP_001100981.1| putative composite two componen...    53   4e-09

>gi|134094525|ref|YP_001099600.1| chemotactic response regulator
           [Herminiimonas arsenicoxydans]
          Length = 121

 Score = 63.5 bits (153), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 3/116 (2%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           +L VDD   +       L   GY+V  A+ G D L KAQ Q  DLV++D  MP M+G  L
Sbjct: 5   ILAVDDSGSLRQMVVFSLRAAGYQVTEAVDGQDGLDKAQMQVFDLVLTDQNMPRMDGFSL 64

Query: 75  CAALRALPGGPALPIILC---SGAPERHDLSQSSHNLFLRKPVFFERLLQEIQRLL 127
             ALRALP    +PI++    S    +     +  N +L KP   +RL + +++++
Sbjct: 65  IRALRALPTYQKVPILVLTTESSDEMKAKGRAAGANGWLVKPFDPQRLTEVVKKVI 120


>gi|134094133|ref|YP_001099208.1| putative response regulator
           receiver [Herminiimonas arsenicoxydans]
          Length = 560

 Score = 55.5 bits (132), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 7   PQQAVLPLLLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMM 66
           P    L +LL  D+EI+     A LL+  G+ V  A +G +A+   QQ   D+++ D  M
Sbjct: 433 PASRTLHILLAEDNEINQKVVVA-LLKKSGHTVQIAQNGREAVLAVQQGVFDVILMDMHM 491

Query: 67  PVMNGLELCAALRALPG-GPALPIILCSGAPERHDLS---QSSHNLFLRKPVFFERLLQE 122
           P M+GL    A+R +P    +LPI+  + A    D+     +  N FL KP   ERL   
Sbjct: 492 PEMDGLAATRAIRGMPAPACSLPIVALTAAVTLSDIQTCMDAGMNYFLAKPFRIERLNGI 551

Query: 123 IQRLLPTRS 131
           +Q L   ++
Sbjct: 552 LQELFSVKA 560


>gi|134095910|ref|YP_001100985.1| twitching motility protein
           [Herminiimonas arsenicoxydans]
          Length = 133

 Score = 55.5 bits (132), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 3/113 (2%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           ++++DD   I  +  + L   GY+VV A  G DAL K     P L+  D +MP ++G + 
Sbjct: 12  IMVIDDSSTIRRSAEIFLGQAGYKVVLADDGFDALAKMNDHKPALIFCDILMPRLDGYQT 71

Query: 75  CAALRALPGGPALPIILCS---GAPERHDLSQSSHNLFLRKPVFFERLLQEIQ 124
           CA ++      + P+I+ S   G  +R   +    + +L KP   + LL+ ++
Sbjct: 72  CALIKKSAKFHSTPVIMLSSKDGLFDRARGAMVGSDAYLTKPFTKDSLLKTVR 124


>gi|134093856|ref|YP_001098931.1| two-component system response
           regulator [Herminiimonas arsenicoxydans]
          Length = 231

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 15  LLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLEL 74
           +L+++DE  I D     L   G+ V  A +G D L  A  +  DL++ D M+P+++G EL
Sbjct: 3   ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWEL 62

Query: 75  CAALRALPGGPALPIILCSGAPERHDLSQS---SHNLFLRKPVFFERLLQEIQRLL 127
             ALR+      +P+I  +   E  D  +      + +L KP  F  LL  I+ LL
Sbjct: 63  LTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLL 118


>gi|134095906|ref|YP_001100981.1| putative composite two component
            regulatory (sensor histidine kinase and response
            regulator hybrid) transcription regulator protein
            [Herminiimonas arsenicoxydans]
          Length = 1969

 Score = 53.1 bits (126), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 14   LLLIVDDEIDITDTYAMLLELHGYRVVSAIHGADALTKAQQQWPDLVISDCMMPVMNGLE 73
            ++++VDD + +      LL   GY+VV A  G DAL   Q   PD+++ D  MP M+G +
Sbjct: 1846 IVMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFD 1905

Query: 74   LCAALRALPGGPALPIILC---SGAPERHDLSQSSHNLFLRKPVFFERLLQ 121
            L   +R       +PII+    + +  R+   +   N +L KP   E L++
Sbjct: 1906 LTRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQEEALVK 1956


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 214,805
Number of extensions: 6573
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 5
Length of query: 131
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 59
Effective length of database: 763,107
Effective search space: 45023313
Effective search space used: 45023313
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)