BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3658.p (236 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 75 3e-15 gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 73 1e-14 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 73 2e-14 gi|134093754|ref|YP_001098829.1| two-component regulatory system... 69 1e-13 gi|134095287|ref|YP_001100362.1| two-component regulatory system... 67 6e-13 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 75.1 bits (183), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/234 (26%), Positives = 111/234 (47%), Gaps = 5/234 (2%) Query: 1 MKVLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLS 60 M++L+ E D + L+ + + GY + +A L + D+L+ D+GLP S Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYVTDCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 PELASLRQHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRMK 120 L LR + ++ILTA E+R++ + GAD ++ KP L E+ A + AL RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRR-G 119 Query: 121 TAPHQSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVSHTQLFDLL 180 + + +++ + GR++ L+ + +E L LLQ VS QL D L Sbjct: 120 AGGGPTVIKHGPLSYD-QVGRIAYINDQMLELSARELGLLEVLLQRSGRLVSKEQLVDHL 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLMLRRSSAVDIVL 234 EE + I+ ++R+R+K+ ++I + G G+ + + + A L Sbjct: 179 CEWSEEVSNNAIEVYVHRLRKKIEI---GGLRIATVRGLGYCLEKFAEATPTTL 229 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 8/224 (3%) Query: 3 VLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLSPE 62 +LIVE + ++ + G+ ++ + G+A D ++ R P ++L D LPD S Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 63 LASLR--QHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRMK 120 L+ +R + F + I++LTA + E+++ + +GAD Y+ KP E++A + AL RR K Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRR-K 126 Query: 121 TAPH-QSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVSHTQLFDL 179 T H Q+ + + + S +S N + + E L L P+ S +QL D Sbjct: 127 TPEHAQTLMTAGSISLDPISCSVSMNDE-KIDIGHAEFKLLKFFLAHPDRVFSRSQLLDK 185 Query: 180 LRSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLM 223 + + +D + R+R+ L+ EA I+ + G+++ Sbjct: 186 VWGDHVVIEERTVDVHVLRLRKALK---EAEHLIKTVRSVGYML 226 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 5/223 (2%) Query: 1 MKVLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLS 60 M++LIVE D L+ + + GY + + A L ++L DI LP Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 PELASLRQHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARRMK 120 L LR+ + ++ILTA ++R+ + GAD Y+ KP L E A + AL RR + Sbjct: 61 AVLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRGQ 120 Query: 121 TAPHQSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPVSHTQLFDLL 180 +S F+ ++ RL N V ++ + +E LL V+ Q+ D L Sbjct: 121 FDAGKSLTHG-GLRFDLEAHRLFHN-DVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRL 178 Query: 181 RSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLM 223 G++ ++ I+ ++R+R+KL + IR + G G+L+ Sbjct: 179 FGWGDDGGSNAIEVYVHRMRKKLEPY---NITIRTVRGMGYLL 218 >gi|134093754|ref|YP_001098829.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 69.3 bits (168), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 104/232 (44%), Gaps = 24/232 (10%) Query: 3 VLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQPDMLLSDIGLPDGSLSPE 62 +L+VE +L L + + + + S+ A D+++ R P ++L D LPD S Sbjct: 8 ILVVEDELSIVELLRFTLEDANWNVVAAGSVAAAWDLIQIRPPHLILLDWMLPDQSGLQL 67 Query: 63 LASLRQ--HFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDEVSATLTALARR-- 118 L+ +R+ F + I++LTA + E+++ + +GAD Y+ KP E+ A +T L + Sbjct: 68 LSRVRESRQFRGLPIIMLTAKSMEEDKVTGLENGADDYVTKPFSPRELIARVTVLLKHKV 127 Query: 119 -------MKTAPHQSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALLQSPNYPV 171 MK P + P S R+ S G + E L LL PN+ Sbjct: 128 PEHAQETMKAGPIRLDPAS----------RMVSVGTKNITIGHAEFKLLKYLLAHPNHVY 177 Query: 172 SHTQLFDLLRSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGFLM 223 S QL D + D +D + R+R + L E I+ + G G+++ Sbjct: 178 SRDQLIDRVWGRHIAIDERTVDVNVLRLR---KVLGEGRYLIKTVRGVGYML 226 >gi|134095287|ref|YP_001100362.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 67.4 bits (163), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 105/237 (44%), Gaps = 39/237 (16%) Query: 1 MKVLIVESDLDWRNTLSTHVGELGYEISVCSSLGQARDILRCRQP-DMLLSDIGLPDGSL 59 M+VL++E D +L + + Y + G A ++ C D++L D+GLP Sbjct: 1 MRVLLIEDDPMIGESLEEGLRKEQYAVDWVRD-GHAAELAICSHTYDIVLLDLGLPGKQG 59 Query: 60 SPELASLRQHFPSMGIVILTAATRSEERLRCMSDGADYYLVKPVKLDE------------ 107 L + R+ ++I++A + R++ + GAD YLVKP LDE Sbjct: 60 LAVLTNYRRKHGEAAVLIISARDATAMRVQGLDSGADDYLVKPFDLDELFARMRALLRRR 119 Query: 108 ---VSATLTALARRMKTAPHQSSPQSEKWAFNRKSGRLSSNGKVALQFTDKESTALAALL 164 VS+ L M A H++ AFN S + F+ +E L AL+ Sbjct: 120 SGRVSSELIYRELTMNPATHEA-------AFNGAS----------VHFSAREFALLLALI 162 Query: 165 QSPNYPVSHTQLFDLLRSGGEEYDAHRIDALIYRVRQKLRSLPEAPMQIRNIYGEGF 221 P +S TQL + L EE +++ I+ I+ +R+KL I+N+ G G+ Sbjct: 163 DPPGRVMSRTQLEERLYGWNEEIESNTIEVYIHGLRKKL-----GTDFIKNVRGVGY 214 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.133 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 431,059 Number of extensions: 16408 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 12 Length of query: 236 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 157 Effective length of database: 740,042 Effective search space: 116186594 Effective search space used: 116186594 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)